Analysis of interatomic Contacts of Structural Units in PDB entry:
1JBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JBP entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 1JBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLY 9GLY 9
E
 GLU 11TRP 196
E
 LEU 198VAL 337
E
 ILE 339PHE 350
S
 THR 361ASP 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1JBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
13 32Right-handed alpha
Helix 2
2
E
39 41Right-handed 310
Helix 3
3
E
76 82Right-handed alpha
Helix 4
4
E
84 98Right-handed alpha
Helix 5
5
E
127 136Right-handed alpha
Helix 6
6
E
139 160Right-handed alpha
Helix 7
7
E
168 170Right-handed 310
Helix 8
8
E
201 205Right-handed 310
Helix 9
9
E
206 211Right-handed alpha
Helix 10
10
E
217 234Right-handed alpha
Helix 11
11
E
242 253Right-handed alpha
Helix 12
12
E
262 273Right-handed alpha
Helix 13
13
E
288 293Right-handed alpha
Helix 14
14
E
295 300Right-handed 310
Helix 15
15
E
301 307Right-handed alpha
Helix 16
16
S
361 368Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1JBP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 51first strand
Strand 2
E
55 62anti-parallel
Strand 3
E
68 75anti-parallel
Strand 4
E
115 121anti-parallel
Strand 5
E
106 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
162 163first strand
Strand 2
E
189 190anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
172 174first strand
Strand 2
E
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
199 200first strand
Strand 2
S
378 379anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il