Analysis of interatomic Contacts of Structural Units in PDB entry:
1JBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JBV entry

There are 2 chains in PDB entry 1JBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 184
A
 ALA 186GLY 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1JBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
22 32Right-handed alpha
Helix 3
3
A
34 38Right-handed 310
Helix 4
4
A
49 64Right-handed alpha
Helix 5
5
A
78 81Right-handed 310
Helix 6
6
A
91 113Right-handed alpha
Helix 7
7
A
119 135Right-handed alpha
Helix 8
8
A
170 175Right-handed alpha
Helix 9
9
A
177 184Right-handed alpha
Helix 10
10
A
201 216Right-handed alpha
Helix 11
11
A
259 279Right-handed alpha
Helix 12
12
A
284 295Right-handed alpha
Helix 13
13
A
317 332Right-handed alpha
Helix 14
14
A
352 357Right-handed alpha
Helix 15
15
A
390 402Right-handed alpha
Helix 16
16
A
412 425Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1JBV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
83 85anti-parallel
Strand 3
A
68 71anti-parallel
Strand 4
A
139 143parallel
Strand 5
A
41 45parallel
Strand 6
A
160 163parallel
Strand 7
A
195 197parallel
Strand 8
A
219 221parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 233first strand
Strand 2
A
238 244anti-parallel
Strand 3
A
247 254anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 305first strand
Strand 2
A
310 312anti-parallel
Strand 3
A
407 410parallel
Strand 4
A
337 340parallel
Strand 5
A
361 364parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il