Analysis of interatomic Contacts of Structural Units in PDB entry:
1JC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JC5 entry

There are 6 chains in PDB entry 1JC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3LYS 147
B
 MET 1LYS 147
C
 ASN 3LYS 147
D
 GLU 4ASN 148
E
 GLU 4ASN 148
F
 GLU 4LYS 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1JC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
74 82Right-handed alpha
Helix 3
3
A
98 109Right-handed alpha
Helix 4
4
B
19 30Right-handed alpha
Helix 5
5
B
74 83Right-handed alpha
Helix 6
6
B
98 109Right-handed alpha
Helix 7
7
B
122 124Right-handed 310
Helix 8
8
B
131 136Right-handed alpha
Helix 9
9
C
19 30Right-handed alpha
Helix 10
10
C
74 83Right-handed alpha
Helix 11
11
C
98 109Right-handed alpha
Helix 12
12
C
122 124Right-handed 310
Helix 13
13
C
132 136Right-handed 310
Helix 14
14
D
19 32Right-handed alpha
Helix 15
15
D
74 82Right-handed alpha
Helix 16
16
D
98 109Right-handed alpha
Helix 17
17
D
122 124Right-handed 310
Helix 18
18
D
131 135Right-handed 310
Helix 19
19
E
19 30Right-handed alpha
Helix 20
20
E
74 83Right-handed alpha
Helix 21
21
E
98 109Right-handed alpha
Helix 22
22
E
122 124Right-handed 310
Helix 23
23
E
131 136Right-handed alpha
Helix 24
24
F
19 30Right-handed alpha
Helix 25
25
F
74 83Right-handed alpha
Helix 26
26
F
98 109Right-handed alpha
Helix 27
27
F
122 124Right-handed 310
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There are 5 sheets in PDB entry 1JC5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 41first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
63 69anti-parallel
Strand 4
A
9 16parallel
Strand 5
A
88 96anti-parallel
Strand 6
A
140 144parallel
Strand 7
A
126 128anti-parallel
Strand 8
A
119 120anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 41first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
63 69anti-parallel
Strand 4
B
9 16parallel
Strand 5
B
88 95anti-parallel
Strand 6
B
140 144parallel
Strand 7
B
126 130anti-parallel
Strand 8
B
119 120anti-parallel
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There are 16 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 120first strand
Strand 2
C
126 129anti-parallel
Strand 3
C
140 144anti-parallel
Strand 4
C
88 95parallel
Strand 5
C
9 16anti-parallel
Strand 6
C
63 69parallel
Strand 7
C
46 52anti-parallel
Strand 8
C
34 41anti-parallel
Strand 9
F
34 41anti-parallel
Strand 10
F
46 52anti-parallel
Strand 11
F
63 69anti-parallel
Strand 12
F
9 16parallel
Strand 13
F
88 96anti-parallel
Strand 14
F
140 144parallel
Strand 15
F
126 129anti-parallel
Strand 16
F
119 120anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 41first strand
Strand 2
D
46 52anti-parallel
Strand 3
D
63 69anti-parallel
Strand 4
D
9 16parallel
Strand 5
D
88 95anti-parallel
Strand 6
D
140 144parallel
Strand 7
D
126 130anti-parallel
Strand 8
D
119 120anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
34 41first strand
Strand 2
E
46 52anti-parallel
Strand 3
E
63 69anti-parallel
Strand 4
E
9 16parallel
Strand 5
E
88 95anti-parallel
Strand 6
E
140 144parallel
Strand 7
E
126 130anti-parallel
Strand 8
E
119 120anti-parallel
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