Analysis of interatomic Contacts of Structural Units in PDB entry:
1JC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JC9 entry

There is 1 chain in PDB entry 1JC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 45PHE 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1JC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 55Right-handed alpha
Helix 2
2
A
69 74Right-handed alpha
Helix 3
3
A
83 87Right-handed 310
Helix 4
4
A
108 115Right-handed alpha
Helix 5
5
A
126 137Right-handed alpha
Helix 6
6
A
164 168Right-handed 310
Helix 7
7
A
184 188Right-handed 310
Helix 8
8
A
205 211Right-handed alpha
Helix 9
9
A
242 247Right-handed alpha
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There are 2 sheets in PDB entry 1JC9. Click on sheet of interest to get list of strands forming it: A, B,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
89 95anti-parallel
Strand 4
A
123 124anti-parallel
Strand 5
A
116 117anti-parallel
Strand 6
A
123 124anti-parallel
Strand 7
A
89 95anti-parallel
Strand 8
A
254 261anti-parallel
Strand 9
A
139 146anti-parallel
Strand 10
A
152 162anti-parallel
Strand 11
A
171 172anti-parallel
Strand 12
A
152 162anti-parallel
Strand 13
A
176 178anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
250 251anti-parallel
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