Analysis of interatomic Contacts of Structural Units in PDB entry:
1JCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JCF entry

There is 1 chain in PDB entry 1JCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1JCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 50Right-handed alpha
Helix 2
2
A
72 89Right-handed alpha
Helix 3
3
A
107 121Right-handed alpha
Helix 4
4
A
131 139Right-handed alpha
Helix 5
5
A
178 195Right-handed alpha
Helix 6
6
A
199 211Right-handed alpha
Helix 7
7
A
216 222Right-handed alpha
Helix 8
8
A
243 250Right-handed alpha
Helix 9
9
A
250 268Right-handed alpha
Helix 10
10
A
269 280Right-handed alpha
Helix 11
11
A
285 290Right-handed 310
Helix 12
12
A
292 302Right-handed alpha
Helix 13
13
A
313 322Right-handed alpha
Helix 14
14
A
325 330Right-handed alpha
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There are 5 sheets in PDB entry 1JCF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 29first strand
Strand 2
A
14 19anti-parallel
Strand 3
A
5 10anti-parallel
Strand 4
A
97 102parallel
Strand 5
A
125 130parallel
Strand 6
A
333 335anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
32 35anti-parallel
Strand 3
A
59 62anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
69 70anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 175first strand
Strand 2
A
159 165anti-parallel
Strand 3
A
149 154anti-parallel
Strand 4
A
281 284parallel
Strand 5
A
305 307parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
223 230anti-parallel
Strand 3
A
236 242anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il