Analysis of interatomic Contacts of Structural Units in PDB entry:
1JCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JCM entry

There is 1 chain in PDB entry 1JCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 MET 1VAL 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1JCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
P
3 21Right-handed alpha
Helix 2
2
P
24 28Right-handed 310
Helix 3
3
P
28 32Right-handed 310
Helix 4
4
P
38 43Right-handed alpha
Helix 5
5
P
69 78Right-handed alpha
Helix 6
6
P
89 94Right-handed alpha
Helix 7
7
P
98 107Right-handed alpha
Helix 8
8
P
119 129Right-handed alpha
Helix 9
9
P
142 154Right-handed alpha
Helix 10
10
P
166 176Right-handed alpha
Helix 11
11
P
195 202Right-handed alpha
Helix 12
12
P
203 206Right-handed 310
Helix 13
13
P
219 227Right-handed alpha
Helix 14
14
P
236 241Right-handed alpha
Helix 15
15
P
244 253Right-handed alpha
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There are 3 sheets in PDB entry 1JCM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
49 54first strand
Strand 2
P
83 87parallel
Strand 3
P
111 114parallel
Strand 4
P
133 137parallel
Strand 5
P
159 164parallel
Strand 6
P
180 184parallel
Strand 7
P
210 214parallel
Strand 8
P
232 235parallel
Strand 9
P
49 54parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
57 58first strand
Strand 2
P
62 63anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
186 187first strand
Strand 2
P
192 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il