Analysis of interatomic Contacts of Structural Units in PDB entry:
1JCT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JCT entry

There are 2 chains in PDB entry 1JCT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ARG 446
B
 PHE 5ARG 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1JCT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 68Right-handed alpha
Helix 2
2
A
68 73Right-handed alpha
Helix 3
3
A
79 91Right-handed alpha
Helix 4
4
A
108 129Right-handed alpha
Helix 5
5
A
132 136Right-handed 310
Helix 6
6
A
156 160Right-handed 310
Helix 7
7
A
172 178Right-handed alpha
Helix 8
8
A
184 200Right-handed alpha
Helix 9
9
A
212 227Right-handed alpha
Helix 10
10
A
241 253Right-handed alpha
Helix 11
11
A
270 283Right-handed alpha
Helix 12
12
A
294 305Right-handed alpha
Helix 13
13
A
313 317Right-handed 310
Helix 14
14
A
318 333Right-handed alpha
Helix 15
15
A
344 356Right-handed alpha
Helix 16
16
A
368 373Right-handed alpha
Helix 17
17
A
403 417Right-handed alpha
Helix 18
18
A
424 429Right-handed alpha
Helix 19
19
B
58 67Right-handed alpha
Helix 20
20
B
68 73Right-handed alpha
Helix 21
21
B
79 91Right-handed alpha
Helix 22
22
B
108 127Right-handed alpha
Helix 23
23
B
132 136Right-handed 310
Helix 24
24
B
156 160Right-handed 310
Helix 25
25
B
172 178Right-handed alpha
Helix 26
26
B
184 200Right-handed alpha
Helix 27
27
B
212 227Right-handed alpha
Helix 28
28
B
241 252Right-handed alpha
Helix 29
29
B
270 283Right-handed alpha
Helix 30
30
B
294 305Right-handed alpha
Helix 31
31
B
313 317Right-handed 310
Helix 32
32
B
318 333Right-handed alpha
Helix 33
33
B
344 356Right-handed alpha
Helix 34
34
B
368 372Right-handed 310
Helix 35
35
B
403 417Right-handed alpha
Helix 36
36
B
424 429Right-handed alpha
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There are 8 sheets in PDB entry 1JCT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 21first strand
Strand 2
A
35 45anti-parallel
Strand 3
A
50 56anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
25 27anti-parallel
Strand 3
A
153 154anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
389 391anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
203 207parallel
Strand 3
A
231 235parallel
Strand 4
A
256 260parallel
Strand 5
A
286 288parallel
Strand 6
A
309 310parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 21first strand
Strand 2
B
35 45anti-parallel
Strand 3
B
50 56anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
25 27anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
204 207parallel
Strand 3
B
234 235parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
286 288parallel
Strand 3
B
309 310parallel
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