Analysis of interatomic Contacts of Structural Units in PDB entry:
1JD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JD0 entry

There are 2 chains in PDB entry 1JD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4SER 261
B
 TRP 5SER 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1JD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 20Right-handed alpha
Helix 3
3
A
21 25Right-handed 310
Helix 4
4
A
34 36Right-handed 310
Helix 5
5
A
130 135Right-handed alpha
Helix 6
6
A
157 162Right-handed alpha
Helix 7
7
A
163 167Right-handed 310
Helix 8
8
A
181 185Right-handed 310
Helix 9
9
A
219 229Right-handed alpha
Helix 10
10
B
12 14Right-handed 310
Helix 11
11
B
15 20Right-handed alpha
Helix 12
12
B
21 25Right-handed 310
Helix 13
13
B
34 36Right-handed 310
Helix 14
14
B
130 135Right-handed alpha
Helix 15
15
B
154 162Right-handed alpha
Helix 16
16
B
163 168Right-handed 310
Helix 17
17
B
181 185Right-handed 310
Helix 18
18
B
219 229Right-handed alpha
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There are 4 sheets in PDB entry 1JD0. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
108 109parallel
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There are 15 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
66 69anti-parallel
Strand 4
A
88 97anti-parallel
Strand 5
A
116 124anti-parallel
Strand 6
A
141 150anti-parallel
Strand 7
A
207 212parallel
Strand 8
A
191 196anti-parallel
Strand 9
A
256 258anti-parallel
Strand 10
A
38 40parallel
Strand 11
A
256 258parallel
Strand 12
A
191 196anti-parallel
Strand 13
A
207 212anti-parallel
Strand 14
A
141 150parallel
Strand 15
A
216 218parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
108 109parallel
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There are 15 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 177first strand
Strand 2
B
56 61anti-parallel
Strand 3
B
66 69anti-parallel
Strand 4
B
88 97anti-parallel
Strand 5
B
116 124anti-parallel
Strand 6
B
141 150anti-parallel
Strand 7
B
207 212parallel
Strand 8
B
191 196anti-parallel
Strand 9
B
256 258anti-parallel
Strand 10
B
38 40parallel
Strand 11
B
256 258parallel
Strand 12
B
191 196anti-parallel
Strand 13
B
207 212anti-parallel
Strand 14
B
141 150parallel
Strand 15
B
216 218parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il