Analysis of interatomic Contacts of Structural Units in PDB entry:
1JD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JD1 entry

There are 6 chains in PDB entry 1JD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ARG 128
B
 THR 3GLU 127
C
 THR 3ARG 128
D
 THR 4GLU 127
E
 LEU 5GLU 127
F
 THR 4ARG 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1JD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 67Right-handed alpha
Helix 2
2
A
70 72Right-handed 310
Helix 3
3
A
83 85Right-handed 310
Helix 4
4
A
86 98Right-handed alpha
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
B
48 67Right-handed alpha
Helix 7
7
B
70 72Right-handed 310
Helix 8
8
B
83 85Right-handed 310
Helix 9
9
B
86 98Right-handed alpha
Helix 10
10
B
113 117Right-handed 310
Helix 11
11
C
48 67Right-handed alpha
Helix 12
12
C
70 72Right-handed 310
Helix 13
13
C
83 85Right-handed 310
Helix 14
14
C
86 98Right-handed alpha
Helix 15
15
C
113 117Right-handed 310
Helix 16
16
D
48 67Right-handed alpha
Helix 17
18
D
83 85Right-handed 310
Helix 18
19
D
86 99Right-handed alpha
Helix 19
20
D
113 117Right-handed 310
Helix 20
21
E
48 67Right-handed alpha
Helix 21
23
E
83 85Right-handed 310
Helix 22
24
E
86 98Right-handed alpha
Helix 23
25
E
113 117Right-handed 310
Helix 24
26
F
48 67Right-handed alpha
Helix 25
29
F
86 98Right-handed alpha
Helix 26
30
F
113 117Right-handed 310
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There are 6 sheets in PDB entry 1JD1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
29 35anti-parallel
Strand 4
A
119 126anti-parallel
Strand 5
A
74 81anti-parallel
Strand 6
A
104 109parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
29 35anti-parallel
Strand 4
B
119 126anti-parallel
Strand 5
B
74 81anti-parallel
Strand 6
B
104 109parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
C
23 26anti-parallel
Strand 3
C
29 35anti-parallel
Strand 4
C
119 126anti-parallel
Strand 5
C
74 81anti-parallel
Strand 6
C
104 109parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 8first strand
Strand 2
D
23 26anti-parallel
Strand 3
D
29 35anti-parallel
Strand 4
D
119 126anti-parallel
Strand 5
D
74 81anti-parallel
Strand 6
D
104 109parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 8first strand
Strand 2
E
23 26anti-parallel
Strand 3
E
29 35anti-parallel
Strand 4
E
119 126anti-parallel
Strand 5
E
74 81anti-parallel
Strand 6
E
104 109parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 8first strand
Strand 2
F
23 26anti-parallel
Strand 3
F
29 35anti-parallel
Strand 4
F
119 126anti-parallel
Strand 5
F
74 81anti-parallel
Strand 6
F
104 109parallel
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