Analysis of interatomic Contacts of Structural Units in PDB entry:
1JD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JD4 entry

There are 2 chains in PDB entry 1JD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 215VAL 310
B
 ASN 215VAL 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1JD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
220 224Right-handed 310
Helix 2
2
A
225 231Right-handed alpha
Helix 3
3
A
232 236Right-handed 310
Helix 4
4
A
243 250Right-handed alpha
Helix 5
5
A
278 287Right-handed alpha
Helix 6
6
A
290 297Right-handed alpha
Helix 7
7
A
298 308Right-handed alpha
Helix 8
8
B
220 224Right-handed 310
Helix 9
9
B
225 231Right-handed alpha
Helix 10
10
B
232 234Right-handed 310
Helix 11
11
B
243 250Right-handed alpha
Helix 12
12
B
278 287Right-handed alpha
Helix 13
13
B
290 297Right-handed alpha
Helix 14
14
B
298 308Right-handed alpha
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There are 2 sheets in PDB entry 1JD4. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
261 263anti-parallel
Strand 3
A
269 270anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 254first strand
Strand 2
B
261 263anti-parallel
Strand 3
B
269 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il