Analysis of interatomic Contacts of Structural Units in PDB entry:
1JDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JDP entry

There are 3 chains in PDB entry 1JDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1PRO 401
B
 ALA 2PRO 401
H
 GLY 5CYS 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1JDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 39Right-handed alpha
Helix 2
2
A
65 78Right-handed alpha
Helix 3
3
A
91 106Right-handed alpha
Helix 4
4
A
116 121Right-handed 310
Helix 5
5
A
135 151Right-handed alpha
Helix 6
6
A
166 183Right-handed alpha
Helix 7
7
A
198 210Right-handed alpha
Helix 8
8
A
218 232Right-handed alpha
Helix 9
9
A
263 271Right-handed alpha
Helix 10
10
A
284 300Right-handed alpha
Helix 11
11
A
310 333Right-handed alpha
Helix 12
12
A
339 348Right-handed alpha
Helix 13
13
B
23 39Right-handed alpha
Helix 14
14
B
65 76Right-handed alpha
Helix 15
15
B
91 105Right-handed alpha
Helix 16
16
B
116 121Right-handed 310
Helix 17
17
B
135 151Right-handed alpha
Helix 18
18
B
166 183Right-handed alpha
Helix 19
19
B
198 208Right-handed alpha
Helix 20
20
B
218 232Right-handed alpha
Helix 21
21
B
248 253Right-handed alpha
Helix 22
22
B
263 271Right-handed alpha
Helix 23
23
B
284 301Right-handed alpha
Helix 24
24
B
310 333Right-handed alpha
Helix 25
25
B
339 348Right-handed alpha
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There are 6 sheets in PDB entry 1JDP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 60first strand
Strand 2
A
7 14parallel
Strand 3
A
85 87parallel
Strand 4
A
109 111parallel
Strand 5
A
129 131parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
154 160parallel
Strand 3
A
212 216parallel
Strand 4
A
240 244parallel
Strand 5
A
274 279parallel
Strand 6
A
370 378anti-parallel
Strand 7
A
383 391anti-parallel
Strand 8
A
396 399anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
357 361anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 60first strand
Strand 2
B
7 14parallel
Strand 3
B
85 87parallel
Strand 4
B
109 111parallel
Strand 5
B
129 131parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 191first strand
Strand 2
B
154 160parallel
Strand 3
B
212 216parallel
Strand 4
B
240 244parallel
Strand 5
B
274 279parallel
Strand 6
B
370 378anti-parallel
Strand 7
B
383 391anti-parallel
Strand 8
B
396 399anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 354first strand
Strand 2
B
357 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il