Analysis of interatomic Contacts of Structural Units in PDB entry:
1JDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1JDV entry

There are 6 chains in PDB entry 1JDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	SER 236
B	ASN 2	SER 236
C	ASN 2	SER 236
D	ASN 2	SER 236
E	ASN 2	SER 236
F	ASN 2	SER 236

There are 54 helices in PDB entry 1JDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	22	31	Right-handed alpha
Helix 2	2	A	41	45	Right-handed 310
Helix 3	3	A	65	79	Right-handed alpha
Helix 4	4	A	113	121	Right-handed alpha
Helix 5	5	A	131	145	Right-handed alpha
Helix 6	6	A	159	163	Right-handed 310
Helix 7	7	A	164	173	Right-handed alpha
Helix 8	8	A	182	194	Right-handed alpha
Helix 9	9	A	218	236	Right-handed alpha
Helix 10	10	B	22	30	Right-handed alpha
Helix 11	11	B	31	33	Right-handed 310
Helix 12	12	B	41	45	Right-handed 310
Helix 13	13	B	65	79	Right-handed alpha
Helix 14	14	B	113	121	Right-handed alpha
Helix 15	15	B	131	145	Right-handed alpha
Helix 16	16	B	159	163	Right-handed 310
Helix 17	17	B	164	173	Right-handed alpha
Helix 18	18	B	182	194	Right-handed alpha
Helix 19	19	B	218	235	Right-handed alpha
Helix 20	20	C	22	31	Right-handed alpha
Helix 21	21	C	41	45	Right-handed 310
Helix 22	22	C	65	79	Right-handed alpha
Helix 23	23	C	113	121	Right-handed alpha
Helix 24	24	C	131	145	Right-handed alpha
Helix 25	25	C	166	173	Right-handed alpha
Helix 26	26	C	182	194	Right-handed alpha
Helix 27	27	C	215	236	Right-handed alpha
Helix 28	28	D	22	31	Right-handed alpha
Helix 29	29	D	41	45	Right-handed 310
Helix 30	30	D	65	79	Right-handed alpha
Helix 31	31	D	113	121	Right-handed alpha
Helix 32	32	D	131	145	Right-handed alpha
Helix 33	33	D	159	163	Right-handed 310
Helix 34	34	D	164	173	Right-handed alpha
Helix 35	35	D	182	194	Right-handed alpha
Helix 36	36	D	218	235	Right-handed alpha
Helix 37	37	E	22	30	Right-handed alpha
Helix 38	38	E	31	33	Right-handed 310
Helix 39	39	E	41	45	Right-handed 310
Helix 40	40	E	65	79	Right-handed alpha
Helix 41	41	E	113	121	Right-handed alpha
Helix 42	42	E	131	145	Right-handed alpha
Helix 43	43	E	159	163	Right-handed 310
Helix 44	44	E	164	173	Right-handed alpha
Helix 45	45	E	182	194	Right-handed alpha
Helix 46	46	E	218	235	Right-handed alpha
Helix 47	47	F	22	31	Right-handed alpha
Helix 48	48	F	41	45	Right-handed 310
Helix 49	49	F	65	79	Right-handed alpha
Helix 50	50	F	113	121	Right-handed alpha
Helix 51	51	F	131	145	Right-handed alpha
Helix 52	52	F	166	173	Right-handed alpha
Helix 53	53	F	182	194	Right-handed alpha
Helix 54	54	F	215	235	Right-handed alpha

There are 6 sheets in PDB entry 1JDV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	40	first strand
Strand 2	A	47	52	anti-parallel
Strand 3	A	55	61	anti-parallel
Strand 4	A	16	20	parallel
Strand 5	A	83	92	parallel
Strand 6	A	176	180	anti-parallel
Strand 7	A	149	156	parallel
Strand 8	A	102	109	parallel
Strand 9	A	196	206	anti-parallel
Strand 10	A	83	92	parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	40	first strand
Strand 2	B	47	52	anti-parallel
Strand 3	B	55	61	anti-parallel
Strand 4	B	16	20	parallel
Strand 5	B	83	92	parallel
Strand 6	B	176	180	anti-parallel
Strand 7	B	149	156	parallel
Strand 8	B	102	109	parallel
Strand 9	B	196	206	anti-parallel
Strand 10	B	83	92	parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	40	first strand
Strand 2	C	47	52	anti-parallel
Strand 3	C	55	61	anti-parallel
Strand 4	C	16	20	parallel
Strand 5	C	83	92	parallel
Strand 6	C	176	180	anti-parallel
Strand 7	C	149	156	parallel
Strand 8	C	102	109	parallel
Strand 9	C	196	206	anti-parallel
Strand 10	C	83	92	parallel

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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	40	first strand
Strand 2	D	47	52	anti-parallel
Strand 3	D	55	61	anti-parallel
Strand 4	D	16	20	parallel
Strand 5	D	83	92	parallel
Strand 6	D	176	180	anti-parallel
Strand 7	D	149	156	parallel
Strand 8	D	102	109	parallel
Strand 9	D	196	206	anti-parallel
Strand 10	D	83	92	parallel

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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	40	first strand
Strand 2	E	47	52	anti-parallel
Strand 3	E	55	61	anti-parallel
Strand 4	E	16	20	parallel
Strand 5	E	83	92	parallel
Strand 6	E	176	180	anti-parallel
Strand 7	E	149	156	parallel
Strand 8	E	102	109	parallel
Strand 9	E	196	206	anti-parallel
Strand 10	E	83	92	parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	40	first strand
Strand 2	F	47	52	anti-parallel
Strand 3	F	55	61	anti-parallel
Strand 4	F	16	20	parallel
Strand 5	F	83	92	parallel
Strand 6	F	176	180	anti-parallel
Strand 7	F	149	156	parallel
Strand 8	F	102	109	parallel
Strand 9	F	196	206	anti-parallel
Strand 10	F	83	92	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1JDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
1JDV