Analysis of interatomic Contacts of Structural Units in PDB entry:
1JDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JDZ entry

There are 3 chains in PDB entry 1JDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3SER 236
B
 PRO 3SER 236
C
 PRO 3SER 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1JDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 31Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
65 79Right-handed alpha
Helix 4
4
A
113 121Right-handed alpha
Helix 5
5
A
131 145Right-handed alpha
Helix 6
6
A
166 173Right-handed alpha
Helix 7
7
A
182 194Right-handed alpha
Helix 8
8
A
217 235Right-handed alpha
Helix 9
9
B
22 30Right-handed alpha
Helix 10
10
B
31 33Right-handed 310
Helix 11
11
B
41 45Right-handed 310
Helix 12
12
B
65 79Right-handed alpha
Helix 13
13
B
113 121Right-handed alpha
Helix 14
14
B
131 145Right-handed alpha
Helix 15
15
B
166 173Right-handed alpha
Helix 16
16
B
182 194Right-handed alpha
Helix 17
17
B
217 235Right-handed alpha
Helix 18
18
C
22 30Right-handed alpha
Helix 19
19
C
31 33Right-handed 310
Helix 20
20
C
41 45Right-handed 310
Helix 21
21
C
65 79Right-handed alpha
Helix 22
22
C
113 121Right-handed alpha
Helix 23
23
C
131 145Right-handed alpha
Helix 24
24
C
166 174Right-handed alpha
Helix 25
25
C
182 194Right-handed alpha
Helix 26
26
C
217 235Right-handed alpha
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There are 3 sheets in PDB entry 1JDZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
55 61anti-parallel
Strand 4
A
16 20parallel
Strand 5
A
83 92parallel
Strand 6
A
176 180anti-parallel
Strand 7
A
149 156parallel
Strand 8
A
102 109parallel
Strand 9
A
196 206anti-parallel
Strand 10
A
83 92parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 40first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
55 61anti-parallel
Strand 4
B
16 20parallel
Strand 5
B
83 92parallel
Strand 6
B
176 180anti-parallel
Strand 7
B
149 156parallel
Strand 8
B
102 109parallel
Strand 9
B
196 206anti-parallel
Strand 10
B
83 92parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 40first strand
Strand 2
C
47 52anti-parallel
Strand 3
C
55 61anti-parallel
Strand 4
C
16 20parallel
Strand 5
C
83 92parallel
Strand 6
C
176 180anti-parallel
Strand 7
C
149 156parallel
Strand 8
C
102 109parallel
Strand 9
C
196 206anti-parallel
Strand 10
C
83 92parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il