Analysis of interatomic Contacts of Structural Units in PDB entry:
1JE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JE5 entry

There are 2 chains in PDB entry 1JE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 197
B
 ALA 2SER 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1JE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 75Right-handed alpha
Helix 2
2
A
190 194Right-handed 310
Helix 3
3
B
48 74Right-handed alpha
Helix 4
4
B
187 194Right-handed 310
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There are 4 sheets in PDB entry 1JE5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 23first strand
Strand 2
A
37 45anti-parallel
Strand 3
A
11 13anti-parallel
Strand 4
A
148 158anti-parallel
Strand 5
A
6 7anti-parallel
Strand 6
A
148 158anti-parallel
Strand 7
A
167 179anti-parallel
Strand 8
A
129 130parallel
Strand 9
A
167 179parallel
Strand 10
A
103 111parallel
Strand 11
A
96 98anti-parallel
Strand 12
A
103 111anti-parallel
Strand 13
A
37 45anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
122 124anti-parallel
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There are 13 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
37 45anti-parallel
Strand 3
B
11 13anti-parallel
Strand 4
B
148 158anti-parallel
Strand 5
B
6 7anti-parallel
Strand 6
B
148 158anti-parallel
Strand 7
B
167 179anti-parallel
Strand 8
B
128 130parallel
Strand 9
B
167 179parallel
Strand 10
B
103 111parallel
Strand 11
B
96 98anti-parallel
Strand 12
B
103 111anti-parallel
Strand 13
B
37 45anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 115first strand
Strand 2
B
122 124anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il