Analysis of interatomic Contacts of Structural Units in PDB entry:
1JE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JE6 entry

There is 1 chain in PDB entry 1JE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0SER 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1JE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 54Right-handed alpha
Helix 2
2
A
55 81Right-handed alpha
Helix 3
3
A
132 148Right-handed alpha
Helix 4
4
A
157 174Right-handed alpha
Helix 5
5
A
177 181Right-handed 310
Helix 6
6
A
253 255Right-handed 310
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There are 3 sheets in PDB entry 1JE6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
23 28anti-parallel
Strand 4
A
3 13anti-parallel
Strand 5
A
88 98anti-parallel
Strand 6
A
104 112anti-parallel
Strand 7
A
115 121anti-parallel
Strand 8
A
127 128anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
197 207anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
229 230anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
257 263anti-parallel
Strand 4
A
266 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il