Analysis of interatomic Contacts of Structural Units in PDB entry:
1JED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JED entry

There are 2 chains in PDB entry 1JED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2PHE 511
B
 PRO 2PHE 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 1JED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
19 28Right-handed alpha
Helix 3
3
A
38 50Right-handed alpha
Helix 4
4
A
61 72Right-handed alpha
Helix 5
5
A
89 94Right-handed alpha
Helix 6
6
A
124 134Right-handed alpha
Helix 7
7
A
139 148Right-handed alpha
Helix 8
8
A
175 186Right-handed alpha
Helix 9
9
A
201 216Right-handed alpha
Helix 10
10
A
234 246Right-handed alpha
Helix 11
11
A
247 249Right-handed 310
Helix 12
12
A
266 281Right-handed alpha
Helix 13
13
A
308 317Right-handed alpha
Helix 14
14
A
317 322Right-handed alpha
Helix 15
15
A
344 346Right-handed 310
Helix 16
16
A
357 368Right-handed alpha
Helix 17
17
A
377 388Right-handed alpha
Helix 18
18
A
390 394Right-handed 310
Helix 19
19
A
407 423Right-handed alpha
Helix 20
20
A
436 441Right-handed alpha
Helix 21
21
A
442 449Right-handed alpha
Helix 22
22
A
460 467Right-handed 310
Helix 23
23
A
491 506Right-handed alpha
Helix 24
24
B
11 16Right-handed alpha
Helix 25
25
B
19 28Right-handed alpha
Helix 26
26
B
38 50Right-handed alpha
Helix 27
27
B
61 72Right-handed alpha
Helix 28
28
B
89 94Right-handed alpha
Helix 29
29
B
124 134Right-handed alpha
Helix 30
30
B
139 148Right-handed alpha
Helix 31
31
B
175 186Right-handed alpha
Helix 32
32
B
201 216Right-handed alpha
Helix 33
33
B
234 246Right-handed alpha
Helix 34
34
B
247 249Right-handed 310
Helix 35
35
B
266 281Right-handed alpha
Helix 36
36
B
308 317Right-handed alpha
Helix 37
37
B
317 322Right-handed alpha
Helix 38
38
B
344 346Right-handed 310
Helix 39
39
B
357 368Right-handed alpha
Helix 40
40
B
377 388Right-handed alpha
Helix 41
41
B
390 394Right-handed 310
Helix 42
42
B
407 423Right-handed alpha
Helix 43
43
B
436 441Right-handed alpha
Helix 44
44
B
442 449Right-handed alpha
Helix 45
45
B
460 467Right-handed 310
Helix 46
46
B
491 506Right-handed alpha
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There are 10 sheets in PDB entry 1JED. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
101 106parallel
Strand 3
A
110 121anti-parallel
Strand 4
A
152 160anti-parallel
Strand 5
A
58 59anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
101 106parallel
Strand 3
A
110 121anti-parallel
Strand 4
A
152 160anti-parallel
Strand 5
A
87 88anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
218 223parallel
Strand 3
A
191 196parallel
Strand 4
A
285 288parallel
Strand 5
A
324 327parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
339 342anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
452 455parallel
Strand 3
A
396 400parallel
Strand 4
A
472 476parallel
Strand 5
A
483 484parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
101 106parallel
Strand 3
B
110 121anti-parallel
Strand 4
B
152 160anti-parallel
Strand 5
B
58 59anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
101 106parallel
Strand 3
B
110 121anti-parallel
Strand 4
B
152 160anti-parallel
Strand 5
B
87 88anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 256first strand
Strand 2
B
218 223parallel
Strand 3
B
191 196parallel
Strand 4
B
285 288parallel
Strand 5
B
324 327parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 334first strand
Strand 2
B
339 342anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 430first strand
Strand 2
B
452 455parallel
Strand 3
B
396 400parallel
Strand 4
B
472 476parallel
Strand 5
B
483 484parallel
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