Analysis of interatomic Contacts of Structural Units in PDB entry:
1JFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JFI entry

There are 5 chains in PDB entry 1JFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 T 601 C 618
E
 G 702 A 719
A
 ALA 10GLU 75
B
 ASP 109GLN 243
C
 SER 356THR 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1JFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 22Right-handed alpha
Helix 2
2
A
32 58Right-handed alpha
Helix 3
3
A
66 72Right-handed alpha
Helix 4
4
B
114 126Right-handed alpha
Helix 5
5
B
132 161Right-handed alpha
Helix 6
6
B
167 179Right-handed alpha
Helix 7
7
B
180 182Right-handed 310
Helix 8
8
B
183 209Right-handed alpha
Helix 9
9
B
214 242Right-handed alpha
Helix 10
10
C
379 387Right-handed alpha
Helix 11
11
C
426 444Right-handed alpha
Helix 12
12
C
469 477Right-handed alpha
Helix 13
13
C
517 534Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1JFI.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
390 393first strand
Strand 2
C
397 404anti-parallel
Strand 3
C
410 413anti-parallel
Strand 4
C
418 422anti-parallel
Strand 5
C
364 373anti-parallel
Strand 6
C
451 463anti-parallel
Strand 7
C
509 515anti-parallel
Strand 8
C
501 504anti-parallel
Strand 9
C
491 494anti-parallel
Strand 10
C
482 482anti-parallel
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