Analysis of interatomic Contacts of Structural Units in PDB entry:
1JFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JFR entry

There are 2 chains in PDB entry 1JFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3SER 262
B
 ASN 3SER 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1JFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed alpha
Helix 2
2
A
67 69Right-handed 310
Helix 3
3
A
71 80Right-handed 310
Helix 4
4
A
96 112Right-handed alpha
Helix 5
5
A
117 119Right-handed 310
Helix 6
6
A
131 143Right-handed 310
Helix 7
7
A
186 192Right-handed alpha
Helix 8
8
A
211 213Right-handed 310
Helix 9
9
A
217 231Right-handed alpha
Helix 10
10
A
235 240Right-handed 310
Helix 11
11
B
13 17Right-handed alpha
Helix 12
12
B
67 69Right-handed 310
Helix 13
13
B
71 80Right-handed 310
Helix 14
14
B
96 112Right-handed alpha
Helix 15
15
B
117 119Right-handed 310
Helix 16
16
B
131 143Right-handed 310
Helix 17
17
B
186 192Right-handed alpha
Helix 18
18
B
211 213Right-handed 310
Helix 19
19
B
217 231Right-handed alpha
Helix 20
20
B
235 241Right-handed 310
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There are 4 sheets in PDB entry 1JFR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
41 46anti-parallel
Strand 3
A
83 87anti-parallel
Strand 4
A
56 60parallel
Strand 5
A
125 130parallel
Strand 6
A
149 153parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 174first strand
Strand 2
A
199 204parallel
Strand 3
A
251 256anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 30first strand
Strand 2
B
41 46anti-parallel
Strand 3
B
83 87anti-parallel
Strand 4
B
56 60parallel
Strand 5
B
125 130parallel
Strand 6
B
149 153parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 174first strand
Strand 2
B
199 204parallel
Strand 3
B
251 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il