Analysis of interatomic Contacts of Structural Units in PDB entry:
1JFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JFU entry

There are 2 chains in PDB entry 1JFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLY 180
B
 PRO 4GLY 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1JFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 9Right-handed 310
Helix 2
2
A
10 21Right-handed alpha
Helix 3
3
A
22 24Right-handed 310
Helix 4
4
A
25 29Right-handed 310
Helix 5
5
A
56 59Right-handed 310
Helix 6
6
A
72 90Right-handed alpha
Helix 7
7
A
107 116Right-handed alpha
Helix 8
8
A
129 137Right-handed alpha
Helix 9
9
A
168 180Right-handed alpha
Helix 10
10
B
7 9Right-handed 310
Helix 11
11
B
10 21Right-handed alpha
Helix 12
12
B
22 24Right-handed 310
Helix 13
13
B
25 29Right-handed 310
Helix 14
14
B
56 59Right-handed 310
Helix 15
15
B
72 90Right-handed alpha
Helix 16
16
B
107 116Right-handed alpha
Helix 17
17
B
129 138Right-handed alpha
Helix 18
18
B
168 180Right-handed alpha
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There are 4 sheets in PDB entry 1JFU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
146 150anti-parallel
Strand 4
A
62 68anti-parallel
Strand 5
A
94 100parallel
Strand 6
A
124 125parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
52 54anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
146 150anti-parallel
Strand 4
B
62 68anti-parallel
Strand 5
B
94 100parallel
Strand 6
B
124 125parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
52 54anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il