Analysis of interatomic Contacts of Structural Units in PDB entry:
1JG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JG8 entry

There are 8 chains in PDB entry 1JG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5SER 202
A
 GLY 204SER 347
B
 MET 5SER 202
B
 GLY 204SER 347
C
 MET 5SER 202
C
 GLY 204SER 347
D
 MET 4SER 202
D
 GLY 204SER 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 1JG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
17 26Right-handed alpha
Helix 3
3
A
31 35Right-handed 310
Helix 4
4
A
37 52Right-handed alpha
Helix 5
5
A
61 74Right-handed alpha
Helix 6
6
A
86 91Right-handed alpha
Helix 7
7
A
94 100Right-handed alpha
Helix 8
8
A
115 123Right-handed alpha
Helix 9
9
A
151 166Right-handed alpha
Helix 10
10
A
175 184Right-handed alpha
Helix 11
11
A
186 193Right-handed alpha
Helix 12
12
A
216 231Right-handed alpha
Helix 13
13
A
237 251Right-handed alpha
Helix 14
14
A
254 273Right-handed alpha
Helix 15
15
A
277 281Right-handed 310
Helix 16
16
A
296 308Right-handed alpha
Helix 17
17
A
328 347Right-handed alpha
Helix 18
18
B
10 14Right-handed 310
Helix 19
19
B
17 26Right-handed alpha
Helix 20
20
B
31 35Right-handed 310
Helix 21
21
B
37 51Right-handed alpha
Helix 22
22
B
61 74Right-handed alpha
Helix 23
23
B
86 91Right-handed alpha
Helix 24
24
B
94 101Right-handed alpha
Helix 25
25
B
115 123Right-handed alpha
Helix 26
26
B
151 166Right-handed alpha
Helix 27
27
B
175 184Right-handed alpha
Helix 28
28
B
186 193Right-handed alpha
Helix 29
29
B
216 231Right-handed alpha
Helix 30
30
B
237 251Right-handed alpha
Helix 31
31
B
254 273Right-handed alpha
Helix 32
32
B
277 281Right-handed 310
Helix 33
33
B
296 307Right-handed alpha
Helix 34
34
B
328 347Right-handed alpha
Helix 35
35
C
10 14Right-handed 310
Helix 36
36
C
17 24Right-handed alpha
Helix 37
37
C
31 35Right-handed 310
Helix 38
38
C
37 52Right-handed alpha
Helix 39
39
C
61 74Right-handed alpha
Helix 40
40
C
86 91Right-handed alpha
Helix 41
41
C
94 101Right-handed alpha
Helix 42
42
C
115 123Right-handed alpha
Helix 43
43
C
151 166Right-handed alpha
Helix 44
44
C
175 184Right-handed alpha
Helix 45
45
C
186 192Right-handed alpha
Helix 46
46
C
216 231Right-handed alpha
Helix 47
47
C
237 251Right-handed alpha
Helix 48
48
C
254 273Right-handed alpha
Helix 49
49
C
277 281Right-handed 310
Helix 50
50
C
296 307Right-handed alpha
Helix 51
51
C
328 347Right-handed alpha
Helix 52
52
D
10 14Right-handed 310
Helix 53
53
D
17 26Right-handed alpha
Helix 54
54
D
31 35Right-handed 310
Helix 55
55
D
37 51Right-handed alpha
Helix 56
56
D
61 74Right-handed alpha
Helix 57
57
D
86 91Right-handed alpha
Helix 58
58
D
94 101Right-handed alpha
Helix 59
59
D
115 123Right-handed alpha
Helix 60
60
D
151 166Right-handed alpha
Helix 61
61
D
175 184Right-handed alpha
Helix 62
62
D
186 192Right-handed alpha
Helix 63
63
D
216 231Right-handed alpha
Helix 64
64
D
237 251Right-handed alpha
Helix 65
65
D
254 273Right-handed alpha
Helix 66
66
D
277 281Right-handed 310
Helix 67
67
D
296 307Right-handed alpha
Helix 68
68
D
328 347Right-handed alpha
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There are 15 sheets in PDB entry 1JG8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
309 310parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
211 215anti-parallel
Strand 3
A
196 200anti-parallel
Strand 4
A
168 173parallel
Strand 5
A
133 139parallel
Strand 6
A
79 83parallel
Strand 7
A
103 107parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
113 114anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
312 315anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
309 310parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
211 215anti-parallel
Strand 3
B
196 200anti-parallel
Strand 4
B
168 173parallel
Strand 5
B
133 139parallel
Strand 6
B
79 83parallel
Strand 7
B
103 107parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
113 114anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 289first strand
Strand 2
B
318 322anti-parallel
Strand 3
B
312 313anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
309 310parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 59first strand
Strand 2
C
211 215anti-parallel
Strand 3
C
196 200anti-parallel
Strand 4
C
168 173parallel
Strand 5
C
133 139parallel
Strand 6
C
79 83parallel
Strand 7
C
103 107parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 110first strand
Strand 2
C
113 114anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
285 289first strand
Strand 2
C
318 322anti-parallel
Strand 3
C
312 313anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
D
309 310parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 59first strand
Strand 2
D
211 215anti-parallel
Strand 3
D
196 200anti-parallel
Strand 4
D
168 173parallel
Strand 5
D
133 139parallel
Strand 6
D
79 83parallel
Strand 7
D
103 107parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
285 289first strand
Strand 2
D
318 322anti-parallel
Strand 3
D
312 313anti-parallel
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