Analysis of interatomic Contacts of Structural Units in PDB entry:
1JG9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JG9 entry

There is 1 chain in PDB entry 1JG9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ALA 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1JG9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
13 15Right-handed 310
Helix 3
3
A
16 25Right-handed alpha
Helix 4
4
A
26 52Right-handed alpha
Helix 5
5
A
56 75Right-handed alpha
Helix 6
7
A
89 95Right-handed 310
Helix 7
8
A
104 110Right-handed alpha
Helix 8
9
A
111 117Right-handed alpha
Helix 9
10
A
118 126Right-handed alpha
Helix 10
11
A
161 175Right-handed alpha
Helix 11
12
A
192 201Right-handed alpha
Helix 12
13
A
202 206Right-handed 310
Helix 13
14
A
215 223Right-handed alpha
Helix 14
15
A
261 278Right-handed alpha
Helix 15
16
A
287 291Right-handed 310
Helix 16
17
A
302 320Right-handed alpha
Helix 17
18
A
332 337Right-handed alpha
Helix 18
19
A
350 364Right-handed alpha
Helix 19
20
A
366 376Right-handed alpha
Helix 20
21
A
400 407Right-handed alpha
Helix 21
22
A
410 423Right-handed alpha
Helix 22
23
A
450 456Right-handed alpha
Helix 23
24
A
457 460Right-handed 310
Helix 24
25
A
463 478Right-handed alpha
Helix 25
26
A
487 491Right-handed 310
Helix 26
27
A
497 501Right-handed 310
Helix 27
28
A
507 513Right-handed 310
Helix 28
29
A
517 522Right-handed alpha
Helix 29
30
A
529 548Right-handed alpha
Helix 30
31
A
549 552Right-handed 310
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There are 6 sheets in PDB entry 1JG9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
129 132parallel
Strand 3
A
178 183parallel
Strand 4
A
282 285parallel
Strand 5
A
324 327parallel
Strand 6
A
347 349parallel
Strand 7
A
384 388parallel
Strand 8
A
481 485parallel
Strand 9
A
100 103parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
254 256anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
245 247anti-parallel
Strand 3
A
237 239anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
446 448anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
566 571anti-parallel
Strand 3
A
575 580anti-parallel
Strand 4
A
622 626anti-parallel
Strand 5
A
599 602anti-parallel
Strand 6
A
608 610anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 588first strand
Strand 2
A
615 617anti-parallel
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