Analysis of interatomic Contacts of Structural Units in PDB entry:
1JGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JGA entry

There is 1 chain in PDB entry 1JGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1THR 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1JGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 41Right-handed 310
Helix 2
2
A
75 80Right-handed alpha
Helix 3
3
A
124 128Right-handed 310
Helix 4
4
A
129 134Right-handed alpha
Helix 5
5
A
148 153Right-handed alpha
Helix 6
6
A
164 181Right-handed alpha
Helix 7
7
A
182 185Right-handed 310
Helix 8
8
A
197 209Right-handed alpha
Helix 9
9
A
212 216Right-handed 310
Helix 10
10
A
235 249Right-handed alpha
Helix 11
11
A
257 266Right-handed alpha
Helix 12
12
A
267 273Right-handed alpha
Helix 13
13
A
274 279Right-handed 310
Helix 14
14
A
301 309Right-handed alpha
Helix 15
15
A
325 330Right-handed alpha
Helix 16
16
A
346 357Right-handed alpha
Helix 17
17
A
361 373Right-handed alpha
Helix 18
18
A
374 378Right-handed 310
Helix 19
19
A
380 397Right-handed alpha
Helix 20
20
A
397 409Right-handed alpha
Helix 21
21
A
430 434Right-handed 310
Helix 22
22
A
440 446Right-handed alpha
Helix 23
23
A
447 450Right-handed 310
Helix 24
24
A
456 476Right-handed alpha
Helix 25
25
A
509 518Right-handed alpha
Helix 26
26
A
518 525Right-handed alpha
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There are 5 sheets in PDB entry 1JGA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
51 56parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
22 23anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 31first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
139 143anti-parallel
Strand 4
A
108 112parallel
Strand 5
A
192 196parallel
Strand 6
A
219 222parallel
Strand 7
A
316 321parallel
Strand 8
A
415 420parallel
Strand 9
A
493 497parallel
Strand 10
A
503 506anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
87 88parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
292 293parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il