Analysis of interatomic Contacts of Structural Units in PDB entry:
1JH9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JH9 entry

There are 2 chains in PDB entry 1JH9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A 699 T 715
A
 ALA 2ARG 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1JH9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
14 23Right-handed alpha
Helix 3
3
A
29 44Right-handed alpha
Helix 4
4
A
48 57Right-handed alpha
Helix 5
5
A
71 88Right-handed alpha
Helix 6
6
A
100 114Right-handed alpha
Helix 7
7
A
127 137Right-handed alpha
Helix 8
8
A
138 140Right-handed 310
Helix 9
9
A
162 176Right-handed alpha
Helix 10
10
A
190 207Right-handed alpha
Helix 11
11
A
212 215Right-handed 310
Helix 12
12
A
222 234Right-handed alpha
Helix 13
13
A
247 261Right-handed alpha
Helix 14
14
A
279 283Right-handed 310
Helix 15
15
A
294 311Right-handed alpha
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There are 2 sheets in PDB entry 1JH9. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
61 65parallel
Strand 3
A
118 121parallel
Strand 4
A
142 144parallel
Strand 5
A
156 159parallel
Strand 6
A
318 320parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
242 245parallel
Strand 3
A
270 275parallel
Strand 4
A
288 291parallel
Strand 5
A
324 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il