Analysis of interatomic Contacts of Structural Units in PDB entry:
1JHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JHF entry

There are 2 chains in PDB entry 1JHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ASN 198
B
 GLY 75GLY 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1JHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 23Right-handed alpha
Helix 2
2
A
27 35Right-handed alpha
Helix 3
3
A
39 53Right-handed alpha
Helix 4
4
A
90 92Right-handed 310
Helix 5
5
A
101 105Right-handed 310
Helix 6
6
A
120 124Right-handed 310
Helix 7
7
B
101 105Right-handed 310
Helix 8
8
B
120 124Right-handed 310
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There are 3 sheets in PDB entry 1JHF. Click on sheet of interest to get list of strands forming it: A1, A2, A3,

There are 22 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
164 168anti-parallel
Strand 3
A
152 161anti-parallel
Strand 4
A
144 149anti-parallel
Strand 5
A
186 197anti-parallel
Strand 6
A
130 135anti-parallel
Strand 7
A
111 114anti-parallel
Strand 8
A
76 79parallel
Strand 9
A
94 98anti-parallel
Strand 10
A
76 79anti-parallel
Strand 11
A
111 114parallel
Strand 12
A
130 135anti-parallel
Strand 13
A
186 197anti-parallel
Strand 14
B
186 197anti-parallel
Strand 15
B
130 135anti-parallel
Strand 16
B
111 114anti-parallel
Strand 17
B
130 135anti-parallel
Strand 18
B
186 197anti-parallel
Strand 19
B
144 149anti-parallel
Strand 20
B
153 161anti-parallel
Strand 21
B
164 168anti-parallel
Strand 22
B
177 180anti-parallel
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There are 2 strands in A2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
66 68anti-parallel
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There are 2 strands in A3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
96 98anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il