Analysis of interatomic Contacts of Structural Units in PDB entry:
1JHW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JHW entry

There is 1 chain in PDB entry 1JHW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11TRP 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1JHW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
72 88Right-handed alpha
Helix 2
2
A
106 110Right-handed 310
Helix 3
3
A
155 159Right-handed 310
Helix 4
4
A
182 199Right-handed alpha
Helix 5
5
A
216 224Right-handed alpha
Helix 6
6
A
272 276Right-handed 310
Helix 7
7
A
286 290Right-handed 310
Helix 8
8
A
301 319Right-handed alpha
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There are 4 sheets in PDB entry 1JHW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
20 26anti-parallel
Strand 3
A
47 53anti-parallel
Strand 4
A
59 65anti-parallel
Strand 5
A
93 98parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
115 117parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
293 296parallel
Strand 3
A
281 285anti-parallel
Strand 4
A
249 254anti-parallel
Strand 5
A
261 266anti-parallel
Strand 6
A
134 140parallel
Strand 7
A
150 152anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
293 296parallel
Strand 3
A
281 285anti-parallel
Strand 4
A
249 254anti-parallel
Strand 5
A
261 266anti-parallel
Strand 6
A
134 140parallel
Strand 7
A
164 168anti-parallel
Strand 8
A
172 177anti-parallel
Strand 9
A
206 211parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il