Analysis of interatomic Contacts of Structural Units in PDB entry:
1JI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JI0 entry

There is 1 chain in PDB entry 1JI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 0ALA 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1JI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 52Right-handed alpha
Helix 2
2
A
73 78Right-handed alpha
Helix 3
3
A
96 103Right-handed alpha
Helix 4
4
A
104 106Right-handed 310
Helix 5
5
A
112 125Right-handed alpha
Helix 6
6
A
125 130Right-handed alpha
Helix 7
7
A
140 154Right-handed alpha
Helix 8
8
A
170 187Right-handed alpha
Helix 9
9
A
197 205Right-handed alpha
Helix 10
10
A
222 227Right-handed alpha
Helix 11
11
A
228 236Right-handed alpha
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There are 2 sheets in PDB entry 1JI0. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 29first strand
Strand 2
A
4 15anti-parallel
Strand 3
A
59 64anti-parallel
Strand 4
A
67 68anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
159 163parallel
Strand 3
A
191 195parallel
Strand 4
A
33 37parallel
Strand 5
A
207 212parallel
Strand 6
A
215 221anti-parallel
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