Analysis of interatomic Contacts of Structural Units in PDB entry:
1JI6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JI6 entry

There is 1 chain in PDB entry 1JI6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 64LEU 652
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1JI6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 80Right-handed alpha
Helix 2
2
A
81 87Right-handed 310
Helix 3
3
A
90 99Right-handed alpha
Helix 4
4
A
104 114Right-handed alpha
Helix 5
5
A
114 119Right-handed alpha
Helix 6
6
A
123 154Right-handed alpha
Helix 7
7
A
155 159Right-handed 310
Helix 8
8
A
160 182Right-handed alpha
Helix 9
9
A
183 186Right-handed 310
Helix 10
10
A
190 195Right-handed alpha
Helix 11
11
A
194 210Right-handed alpha
Helix 12
12
A
210 216Right-handed alpha
Helix 13
13
A
222 255Right-handed alpha
Helix 14
14
A
259 277Right-handed alpha
Helix 15
15
A
277 282Right-handed alpha
Helix 16
16
A
283 288Right-handed 310
Helix 17
17
A
315 319Right-handed 310
Helix 18
18
A
321 327Right-handed alpha
Helix 19
19
A
455 459Right-handed alpha
Helix 20
20
A
467 472Right-handed alpha
Helix 21
21
A
518 520Right-handed 310
Helix 22
22
A
558 563Right-handed alpha
Helix 23
23
A
605 609Right-handed 310
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There are 7 sheets in PDB entry 1JI6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 613first strand
Strand 2
A
566 574anti-parallel
Strand 3
A
640 649anti-parallel
Strand 4
A
512 516anti-parallel
Strand 5
A
296 297parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 613first strand
Strand 2
A
566 574anti-parallel
Strand 3
A
640 649anti-parallel
Strand 4
A
540 543anti-parallel
Strand 5
A
527 530anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
490 498anti-parallel
Strand 3
A
474 483anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
A
336 348anti-parallel
Strand 3
A
357 369anti-parallel
Strand 4
A
377 378anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
A
336 348anti-parallel
Strand 3
A
357 369anti-parallel
Strand 4
A
382 383anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 442first strand
Strand 2
A
417 430anti-parallel
Strand 3
A
399 411anti-parallel
Strand 4
A
450 454anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 523first strand
Strand 2
A
551 555anti-parallel
Strand 3
A
625 631anti-parallel
Strand 4
A
578 584anti-parallel
Strand 5
A
589 594anti-parallel
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