Analysis of interatomic Contacts of Structural Units in PDB entry:
1JIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JIF entry

There are 2 chains in PDB entry 1JIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 122
B
 MET 201GLU 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 1JIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 26Right-handed alpha
Helix 2
2
A
55 60Right-handed alpha
Helix 3
3
A
70 80Right-handed alpha
Helix 4
4
B
215 226Right-handed alpha
Helix 5
5
B
255 260Right-handed alpha
Helix 6
6
B
270 279Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1JIF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
46 52anti-parallel
Strand 4
A
4 13parallel
Strand 5
B
263 268anti-parallel
Strand 6
B
315 320parallel
Strand 7
B
305 309anti-parallel
Strand 8
B
293 294anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 234first strand
Strand 2
B
238 243anti-parallel
Strand 3
B
246 252anti-parallel
Strand 4
B
204 213parallel
Strand 5
A
63 68anti-parallel
Strand 6
A
115 120parallel
Strand 7
A
103 109anti-parallel
Strand 8
A
93 94anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 234first strand
Strand 2
B
238 243anti-parallel
Strand 3
B
246 252anti-parallel
Strand 4
B
204 213parallel
Strand 5
A
63 68anti-parallel
Strand 6
A
115 120parallel
Strand 7
A
103 109anti-parallel
Strand 8
A
98 100anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il