Analysis of interatomic Contacts of Structural Units in PDB entry:
1JII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JII entry

There is 1 chain in PDB entry 1JII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1JII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
20 31Right-handed alpha
Helix 3
3
A
47 61Right-handed alpha
Helix 4
4
A
75 79Right-handed 310
Helix 5
5
A
92 111Right-handed alpha
Helix 6
6
A
124 129Right-handed alpha
Helix 7
7
A
132 140Right-handed alpha
Helix 8
8
A
141 144Right-handed 310
Helix 9
9
A
145 150Right-handed alpha
Helix 10
10
A
154 162Right-handed alpha
Helix 11
11
A
164 185Right-handed alpha
Helix 12
12
A
196 211Right-handed alpha
Helix 13
13
A
248 258Right-handed alpha
Helix 14
14
A
260 263Right-handed 310
Helix 15
15
A
264 272Right-handed alpha
Helix 16
16
A
275 289Right-handed alpha
Helix 17
17
A
290 293Right-handed 310
Helix 18
18
A
294 309Right-handed alpha
Helix 19
19
A
310 318Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1JII.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
217 221anti-parallel
Strand 3
A
189 193parallel
Strand 4
A
34 39parallel
Strand 5
A
66 71parallel
Strand 6
A
120 123parallel
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