Analysis of interatomic Contacts of Structural Units in PDB entry:
1JIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JIJ entry

There is 1 chain in PDB entry 1JIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1JIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 10Right-handed alpha
Helix 2
2
A
20 29Right-handed alpha
Helix 3
3
A
50 63Right-handed alpha
Helix 4
4
A
92 111Right-handed alpha
Helix 5
5
A
125 127Right-handed 310
Helix 6
6
A
132 140Right-handed alpha
Helix 7
7
A
141 144Right-handed 310
Helix 8
8
A
145 150Right-handed alpha
Helix 9
9
A
152 161Right-handed alpha
Helix 10
10
A
164 169Right-handed alpha
Helix 11
11
A
169 185Right-handed alpha
Helix 12
12
A
193 195Right-handed 310
Helix 13
13
A
196 211Right-handed alpha
Helix 14
14
A
248 258Right-handed alpha
Helix 15
15
A
264 272Right-handed alpha
Helix 16
16
A
275 289Right-handed alpha
Helix 17
17
A
293 309Right-handed alpha
Helix 18
18
A
310 318Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1JIJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
217 220anti-parallel
Strand 3
A
189 192parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
66 71parallel
Strand 3
A
120 123parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il