Analysis of interatomic Contacts of Structural Units in PDB entry:
1JIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JIN entry

There is 1 chain in PDB entry 1JIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1JIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
15 27Right-handed alpha
Helix 3
3
A
44 54Right-handed alpha
Helix 4
4
A
72 76Right-handed 310
Helix 5
5
A
79 87Right-handed alpha
Helix 6
6
A
89 93Right-handed 310
Helix 7
7
A
96 107Right-handed alpha
Helix 8
8
A
110 116Right-handed alpha
Helix 9
9
A
117 131Right-handed alpha
Helix 10
10
A
140 144Right-handed alpha
Helix 11
11
A
146 158Right-handed alpha
Helix 12
12
A
165 175Right-handed alpha
Helix 13
13
A
178 180Right-handed 310
Helix 14
14
A
181 206Right-handed alpha
Helix 15
15
A
210 218Right-handed alpha
Helix 16
16
A
227 260Right-handed alpha
Helix 17
17
A
260 270Right-handed alpha
Helix 18
18
A
273 285Right-handed alpha
Helix 19
19
A
315 320Right-handed alpha
Helix 20
20
A
346 350Right-handed 310
Helix 21
21
A
353 372Right-handed alpha
Helix 22
22
A
380 384Right-handed 310
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There are 4 sheets in PDB entry 1JIN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
38 42anti-parallel
Strand 3
A
311 314parallel
Strand 4
A
291 295anti-parallel
Strand 5
A
57 58anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
399 401anti-parallel
Strand 3
A
376 377anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
224 225anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
304 306anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il