Analysis of interatomic Contacts of Structural Units in PDB entry:
1JIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JIZ entry

There are 2 chains in PDB entry 1JIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ASP 165
B
 GLY -1ASP 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1JIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 44Right-handed alpha
Helix 2
2
A
113 125Right-handed alpha
Helix 3
3
A
152 164Right-handed alpha
Helix 4
4
B
27 44Right-handed alpha
Helix 5
5
B
113 125Right-handed alpha
Helix 6
6
B
152 164Right-handed alpha
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There are 4 sheets in PDB entry 1JIZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
14 19parallel
Strand 3
A
60 65parallel
Strand 4
A
96 99parallel
Strand 5
A
83 85anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
111 112parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
14 19parallel
Strand 3
B
60 65parallel
Strand 4
B
96 99parallel
Strand 5
B
83 85anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
111 112parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il