Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JJ7 entry

There is 1 chain in PDB entry 1JJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 492ALA 742
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1JJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
543 552Right-handed alpha
Helix 2
2
A
573 580Right-handed alpha
Helix 3
3
A
594 601Right-handed alpha
Helix 4
4
A
608 619Right-handed alpha
Helix 5
5
A
621 627Right-handed alpha
Helix 6
6
A
630 634Right-handed 310
Helix 7
7
A
644 658Right-handed alpha
Helix 8
8
A
674 687Right-handed alpha
Helix 9
9
A
688 694Right-handed 310
Helix 10
10
A
702 708Right-handed alpha
Helix 11
11
A
725 733Right-handed alpha
Helix 12
12
A
734 741Right-handed alpha
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There are 2 sheets in PDB entry 1JJ7. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 528first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
559 564anti-parallel
Strand 4
A
567 568anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 584first strand
Strand 2
A
663 667parallel
Strand 3
A
695 699parallel
Strand 4
A
533 537parallel
Strand 5
A
711 716parallel
Strand 6
A
719 724anti-parallel
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