Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JJA entry

There are 6 chains in PDB entry 1JJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1TYR 326
B
 LEU 1TYR 326
C
 LEU 1TYR 326
D
 LEU 1TYR 326
E
 LEU 1TYR 326
F
 LEU 1TYR 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 1JJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 39Right-handed alpha
Helix 2
2
A
40 45Right-handed 310
Helix 3
3
A
57 61Right-handed 310
Helix 4
4
A
62 74Right-handed alpha
Helix 5
5
A
75 80Right-handed 310
Helix 6
6
A
91 103Right-handed alpha
Helix 7
7
A
124 137Right-handed alpha
Helix 8
8
A
138 142Right-handed 310
Helix 9
9
A
197 201Right-handed 310
Helix 10
10
A
225 234Right-handed alpha
Helix 11
11
A
250 263Right-handed alpha
Helix 12
12
A
285 290Right-handed alpha
Helix 13
13
A
298 310Right-handed alpha
Helix 14
14
A
315 324Right-handed alpha
Helix 15
15
B
39 45Right-handed 310
Helix 16
16
B
57 61Right-handed 310
Helix 17
17
B
62 77Right-handed alpha
Helix 18
18
B
78 80Right-handed 310
Helix 19
19
B
91 103Right-handed alpha
Helix 20
20
B
124 137Right-handed alpha
Helix 21
21
B
138 142Right-handed 310
Helix 22
22
B
197 201Right-handed 310
Helix 23
23
B
225 234Right-handed alpha
Helix 24
24
B
250 263Right-handed alpha
Helix 25
25
B
285 290Right-handed alpha
Helix 26
26
B
298 311Right-handed alpha
Helix 27
27
B
315 324Right-handed alpha
Helix 28
28
C
24 39Right-handed alpha
Helix 29
29
C
40 45Right-handed 310
Helix 30
30
C
57 61Right-handed 310
Helix 31
31
C
62 77Right-handed alpha
Helix 32
32
C
78 80Right-handed 310
Helix 33
33
C
91 103Right-handed alpha
Helix 34
34
C
124 138Right-handed alpha
Helix 35
35
C
139 142Right-handed 310
Helix 36
36
C
197 201Right-handed 310
Helix 37
37
C
225 234Right-handed alpha
Helix 38
38
C
250 263Right-handed alpha
Helix 39
39
C
285 290Right-handed alpha
Helix 40
40
C
298 313Right-handed alpha
Helix 41
41
C
315 326Right-handed alpha
Helix 42
42
D
39 45Right-handed 310
Helix 43
43
D
57 61Right-handed 310
Helix 44
44
D
62 76Right-handed alpha
Helix 45
45
D
77 80Right-handed 310
Helix 46
46
D
91 103Right-handed alpha
Helix 47
47
D
124 137Right-handed alpha
Helix 48
48
D
138 142Right-handed 310
Helix 49
49
D
197 201Right-handed 310
Helix 50
50
D
225 234Right-handed alpha
Helix 51
51
D
250 261Right-handed alpha
Helix 52
52
D
285 290Right-handed alpha
Helix 53
53
D
298 310Right-handed alpha
Helix 54
54
D
315 324Right-handed alpha
Helix 55
55
E
41 46Right-handed alpha
Helix 56
56
E
57 61Right-handed 310
Helix 57
57
E
62 77Right-handed alpha
Helix 58
58
E
78 80Right-handed 310
Helix 59
59
E
91 103Right-handed alpha
Helix 60
60
E
124 138Right-handed alpha
Helix 61
61
E
197 201Right-handed 310
Helix 62
62
E
225 234Right-handed alpha
Helix 63
63
E
250 263Right-handed alpha
Helix 64
64
E
285 290Right-handed alpha
Helix 65
65
E
298 310Right-handed alpha
Helix 66
66
E
315 324Right-handed alpha
Helix 67
67
F
39 45Right-handed 310
Helix 68
68
F
57 61Right-handed 310
Helix 69
69
F
62 77Right-handed alpha
Helix 70
70
F
78 80Right-handed 310
Helix 71
71
F
91 103Right-handed alpha
Helix 72
72
F
124 138Right-handed alpha
Helix 73
73
F
139 142Right-handed 310
Helix 74
74
F
197 201Right-handed 310
Helix 75
75
F
225 234Right-handed alpha
Helix 76
76
F
250 262Right-handed alpha
Helix 77
77
F
285 290Right-handed alpha
Helix 78
78
F
298 311Right-handed alpha
Helix 79
79
F
315 326Right-handed alpha
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There are 18 sheets in PDB entry 1JJA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
3 8parallel
Strand 3
A
82 86parallel
Strand 4
A
109 112parallel
Strand 5
A
147 150parallel
Strand 6
A
153 156anti-parallel
Strand 7
A
180 183anti-parallel
Strand 8
A
186 189anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
171 173anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
238 243parallel
Strand 3
A
266 271parallel
Strand 4
A
291 293parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 52first strand
Strand 2
B
3 8parallel
Strand 3
B
82 86parallel
Strand 4
B
109 112parallel
Strand 5
B
147 150parallel
Strand 6
B
153 156anti-parallel
Strand 7
B
180 183anti-parallel
Strand 8
B
186 189anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
171 173anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 218first strand
Strand 2
B
238 243parallel
Strand 3
B
266 271parallel
Strand 4
B
291 293parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 52first strand
Strand 2
C
3 8parallel
Strand 3
C
82 86parallel
Strand 4
C
109 112parallel
Strand 5
C
147 150parallel
Strand 6
C
153 156anti-parallel
Strand 7
C
180 183anti-parallel
Strand 8
C
186 189anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 162first strand
Strand 2
C
171 173anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 218first strand
Strand 2
C
238 243parallel
Strand 3
C
266 271parallel
Strand 4
C
291 293parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 52first strand
Strand 2
D
3 8parallel
Strand 3
D
82 86parallel
Strand 4
D
109 112parallel
Strand 5
D
147 150parallel
Strand 6
D
153 156anti-parallel
Strand 7
D
180 183anti-parallel
Strand 8
D
186 189anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 162first strand
Strand 2
D
171 173anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 218first strand
Strand 2
D
238 243parallel
Strand 3
D
266 271parallel
Strand 4
D
292 293parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
47 52first strand
Strand 2
E
3 8parallel
Strand 3
E
82 86parallel
Strand 4
E
109 112parallel
Strand 5
E
147 150parallel
Strand 6
E
153 156anti-parallel
Strand 7
E
180 183anti-parallel
Strand 8
E
186 189anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
160 162first strand
Strand 2
E
171 173anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
214 218first strand
Strand 2
E
238 243parallel
Strand 3
E
266 271parallel
Strand 4
E
291 293parallel
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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
47 52first strand
Strand 2
F
3 8parallel
Strand 3
F
82 86parallel
Strand 4
F
109 112parallel
Strand 5
F
147 150parallel
Strand 6
F
153 156anti-parallel
Strand 7
F
180 183anti-parallel
Strand 8
F
186 189anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
160 162first strand
Strand 2
F
171 173anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
214 218first strand
Strand 2
F
238 243parallel
Strand 3
F
266 271parallel
Strand 4
F
292 293parallel
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