Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JJH entry

There are 3 chains in PDB entry 1JJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 325PHE 410
B
 ALA 325PHE 410
C
 SER 326PHE 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1JJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
334 349Right-handed alpha
Helix 2
2
A
350 353Right-handed 310
Helix 3
3
A
382 393Right-handed alpha
Helix 4
4
B
334 349Right-handed alpha
Helix 5
5
B
350 353Right-handed 310
Helix 6
6
B
382 393Right-handed alpha
Helix 7
7
C
334 349Right-handed alpha
Helix 8
8
C
350 353Right-handed 310
Helix 9
9
C
382 393Right-handed alpha
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There are 2 sheets in PDB entry 1JJH. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 356first strand
Strand 2
A
374 380anti-parallel
Strand 3
A
327 333anti-parallel
Strand 4
A
400 408anti-parallel
Strand 5
B
400 408anti-parallel
Strand 6
B
326 333anti-parallel
Strand 7
B
374 379anti-parallel
Strand 8
B
355 356anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
355 356first strand
Strand 2
C
375 380anti-parallel
Strand 3
C
327 332anti-parallel
Strand 4
C
400 405anti-parallel
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