Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JJI entry

There are 4 chains in PDB entry 1JJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 311
B
 MET 1ASP 311
C
 MET 1ASP 311
D
 MET 1ASP 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 1JJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 13Right-handed alpha
Helix 2
2
A
13 20Right-handed alpha
Helix 3
3
A
22 26Right-handed 310
Helix 4
4
A
28 49Right-handed alpha
Helix 5
5
A
95 97Right-handed 310
Helix 6
6
A
98 110Right-handed alpha
Helix 7
7
A
127 143Right-handed alpha
Helix 8
8
A
143 148Right-handed alpha
Helix 9
9
A
160 176Right-handed alpha
Helix 10
10
A
197 203Right-handed alpha
Helix 11
11
A
211 223Right-handed alpha
Helix 12
12
A
225 231Right-handed 310
Helix 13
13
A
235 239Right-handed 310
Helix 14
14
A
257 271Right-handed alpha
Helix 15
15
A
286 291Right-handed 310
Helix 16
16
A
294 310Right-handed alpha
Helix 17
17
B
8 20Right-handed alpha
Helix 18
18
B
22 26Right-handed 310
Helix 19
19
B
28 49Right-handed alpha
Helix 20
20
B
95 97Right-handed 310
Helix 21
21
B
98 110Right-handed alpha
Helix 22
22
B
127 143Right-handed alpha
Helix 23
23
B
143 148Right-handed alpha
Helix 24
24
B
160 176Right-handed alpha
Helix 25
25
B
197 203Right-handed alpha
Helix 26
26
B
211 223Right-handed alpha
Helix 27
27
B
225 231Right-handed 310
Helix 28
28
B
235 239Right-handed 310
Helix 29
29
B
257 271Right-handed alpha
Helix 30
30
B
286 291Right-handed 310
Helix 31
31
B
294 310Right-handed alpha
Helix 32
32
C
8 13Right-handed alpha
Helix 33
33
C
13 20Right-handed alpha
Helix 34
34
C
22 26Right-handed 310
Helix 35
35
C
28 49Right-handed alpha
Helix 36
36
C
95 97Right-handed 310
Helix 37
37
C
98 110Right-handed alpha
Helix 38
38
C
127 143Right-handed alpha
Helix 39
39
C
143 148Right-handed alpha
Helix 40
40
C
160 175Right-handed alpha
Helix 41
41
C
197 203Right-handed alpha
Helix 42
42
C
211 223Right-handed alpha
Helix 43
43
C
225 231Right-handed 310
Helix 44
44
C
235 239Right-handed 310
Helix 45
45
C
257 271Right-handed alpha
Helix 46
46
C
286 291Right-handed 310
Helix 47
47
C
294 310Right-handed alpha
Helix 48
48
D
8 20Right-handed alpha
Helix 49
49
D
22 26Right-handed 310
Helix 50
50
D
28 49Right-handed alpha
Helix 51
51
D
98 110Right-handed alpha
Helix 52
52
D
127 143Right-handed alpha
Helix 53
53
D
143 148Right-handed alpha
Helix 54
54
D
160 176Right-handed alpha
Helix 55
55
D
197 203Right-handed alpha
Helix 56
56
D
211 223Right-handed alpha
Helix 57
57
D
225 231Right-handed 310
Helix 58
58
D
235 239Right-handed 310
Helix 59
59
D
257 271Right-handed alpha
Helix 60
60
D
286 291Right-handed 310
Helix 61
61
D
294 310Right-handed alpha
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There are 2 sheets in PDB entry 1JJI. Click on sheet of interest to get list of strands forming it: A, B,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 63first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
112 117anti-parallel
Strand 4
A
79 85parallel
Strand 5
A
149 159parallel
Strand 6
A
181 187parallel
Strand 7
A
247 254parallel
Strand 8
A
275 284parallel
Strand 9
B
275 284anti-parallel
Strand 10
B
247 254parallel
Strand 11
B
181 187parallel
Strand 12
B
149 159parallel
Strand 13
B
79 85parallel
Strand 14
B
112 117parallel
Strand 15
B
66 74anti-parallel
Strand 16
B
55 63anti-parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 63first strand
Strand 2
C
66 74anti-parallel
Strand 3
C
112 117anti-parallel
Strand 4
C
79 85parallel
Strand 5
C
149 159parallel
Strand 6
C
181 187parallel
Strand 7
C
247 254parallel
Strand 8
C
275 284parallel
Strand 9
D
275 284anti-parallel
Strand 10
D
247 254parallel
Strand 11
D
181 187parallel
Strand 12
D
149 159parallel
Strand 13
D
79 85parallel
Strand 14
D
112 117parallel
Strand 15
D
66 74anti-parallel
Strand 16
D
55 63anti-parallel
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