Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1JJK entry

There are 16 chains in PDB entry 1JJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 12	GLN 242
B	VAL 12	GLN 242
C	VAL 12	GLN 242
D	VAL 12	GLN 242
E	VAL 12	GLN 242
F	VAL 12	GLN 242
G	VAL 12	GLN 242
H	VAL 12	GLN 242
I	VAL 12	GLN 242
J	VAL 12	GLN 242
K	VAL 12	GLN 242
L	VAL 12	GLN 242
M	VAL 12	GLN 242
N	VAL 12	GLN 242
O	VAL 12	GLN 242
P	VAL 12	GLN 242

There are224 helices in PDB entry 1JJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	36	Right-handed alpha
Helix 2	2	A	37	41	Right-handed 310
Helix 3	3	A	47	54	Right-handed alpha
Helix 4	4	A	53	64	Right-handed alpha
Helix 5	5	A	77	92	Right-handed alpha
Helix 6	6	A	103	115	Right-handed alpha
Helix 7	7	A	116	121	Right-handed 310
Helix 8	8	A	134	139	Right-handed alpha
Helix 9	9	A	146	161	Right-handed alpha
Helix 10	10	A	169	173	Right-handed 310
Helix 11	11	A	174	181	Right-handed alpha
Helix 12	12	A	206	214	Right-handed alpha
Helix 13	13	A	221	226	Right-handed alpha
Helix 14	14	A	229	241	Right-handed alpha
Helix 15	15	B	25	36	Right-handed alpha
Helix 16	16	B	37	41	Right-handed 310
Helix 17	17	B	47	54	Right-handed alpha
Helix 18	18	B	53	64	Right-handed alpha
Helix 19	19	B	77	92	Right-handed alpha
Helix 20	20	B	103	115	Right-handed alpha
Helix 21	21	B	116	121	Right-handed 310
Helix 22	22	B	134	139	Right-handed alpha
Helix 23	23	B	146	161	Right-handed alpha
Helix 24	24	B	169	173	Right-handed 310
Helix 25	25	B	174	181	Right-handed alpha
Helix 26	26	B	206	214	Right-handed alpha
Helix 27	27	B	221	226	Right-handed alpha
Helix 28	28	B	229	241	Right-handed alpha
Helix 29	29	C	25	36	Right-handed alpha
Helix 30	30	C	37	41	Right-handed 310
Helix 31	31	C	47	54	Right-handed alpha
Helix 32	32	C	53	64	Right-handed alpha
Helix 33	33	C	77	92	Right-handed alpha
Helix 34	34	C	103	115	Right-handed alpha
Helix 35	35	C	116	121	Right-handed 310
Helix 36	36	C	134	139	Right-handed alpha
Helix 37	37	C	146	161	Right-handed alpha
Helix 38	38	C	169	173	Right-handed 310
Helix 39	39	C	174	181	Right-handed alpha
Helix 40	40	C	206	214	Right-handed alpha
Helix 41	41	C	221	226	Right-handed alpha
Helix 42	42	C	229	241	Right-handed alpha
Helix 43	43	D	25	36	Right-handed alpha
Helix 44	44	D	37	41	Right-handed 310
Helix 45	45	D	47	54	Right-handed alpha
Helix 46	46	D	53	64	Right-handed alpha
Helix 47	47	D	77	92	Right-handed alpha
Helix 48	48	D	103	115	Right-handed alpha
Helix 49	49	D	116	121	Right-handed 310
Helix 50	50	D	134	139	Right-handed alpha
Helix 51	51	D	146	161	Right-handed alpha
Helix 52	52	D	169	173	Right-handed 310
Helix 53	53	D	174	181	Right-handed alpha
Helix 54	54	D	206	214	Right-handed alpha
Helix 55	55	D	221	226	Right-handed alpha
Helix 56	56	D	229	241	Right-handed alpha
Helix 57	57	E	25	36	Right-handed alpha
Helix 58	58	E	37	41	Right-handed 310
Helix 59	59	E	47	54	Right-handed alpha
Helix 60	60	E	53	64	Right-handed alpha
Helix 61	61	E	77	92	Right-handed alpha
Helix 62	62	E	103	115	Right-handed alpha
Helix 63	63	E	116	121	Right-handed 310
Helix 64	64	E	134	139	Right-handed alpha
Helix 65	65	E	146	161	Right-handed alpha
Helix 66	66	E	169	173	Right-handed 310
Helix 67	67	E	174	181	Right-handed alpha
Helix 68	68	E	206	214	Right-handed alpha
Helix 69	69	E	221	226	Right-handed alpha
Helix 70	70	E	229	241	Right-handed alpha
Helix 71	71	F	25	36	Right-handed alpha
Helix 72	72	F	37	41	Right-handed 310
Helix 73	73	F	47	54	Right-handed alpha
Helix 74	74	F	53	64	Right-handed alpha
Helix 75	75	F	77	92	Right-handed alpha
Helix 76	76	F	103	115	Right-handed alpha
Helix 77	77	F	116	121	Right-handed 310
Helix 78	78	F	134	139	Right-handed alpha
Helix 79	79	F	146	161	Right-handed alpha
Helix 80	80	F	169	173	Right-handed 310
Helix 81	81	F	174	181	Right-handed alpha
Helix 82	82	F	206	214	Right-handed alpha
Helix 83	83	F	221	226	Right-handed alpha
Helix 84	84	F	229	241	Right-handed alpha
Helix 85	85	G	25	36	Right-handed alpha
Helix 86	86	G	37	41	Right-handed 310
Helix 87	87	G	47	54	Right-handed alpha
Helix 88	88	G	53	64	Right-handed alpha
Helix 89	89	G	77	92	Right-handed alpha
Helix 90	90	G	103	115	Right-handed alpha
Helix 91	91	G	116	121	Right-handed 310
Helix 92	92	G	134	139	Right-handed alpha
Helix 93	93	G	146	161	Right-handed alpha
Helix 94	94	G	169	173	Right-handed 310
Helix 95	95	G	174	181	Right-handed alpha
Helix 96	96	G	206	214	Right-handed alpha
Helix 97	97	G	221	226	Right-handed alpha
Helix 98	98	G	229	241	Right-handed alpha
Helix 99	99	H	25	36	Right-handed alpha
Helix 100	100	H	37	41	Right-handed 310
Helix 101	101	H	47	54	Right-handed alpha
Helix 102	102	H	53	64	Right-handed alpha
Helix 103	103	H	77	92	Right-handed alpha
Helix 104	104	H	103	115	Right-handed alpha
Helix 105	105	H	116	121	Right-handed 310
Helix 106	106	H	134	139	Right-handed alpha
Helix 107	107	H	146	161	Right-handed alpha
Helix 108	108	H	169	173	Right-handed 310
Helix 109	109	H	174	181	Right-handed alpha
Helix 110	110	H	206	214	Right-handed alpha
Helix 111	111	H	221	226	Right-handed alpha
Helix 112	112	H	229	241	Right-handed alpha
Helix 113	113	I	25	36	Right-handed alpha
Helix 114	114	I	37	41	Right-handed 310
Helix 115	115	I	47	54	Right-handed alpha
Helix 116	116	I	53	64	Right-handed alpha
Helix 117	117	I	77	92	Right-handed alpha
Helix 118	118	I	103	115	Right-handed alpha
Helix 119	119	I	116	121	Right-handed 310
Helix 120	120	I	134	139	Right-handed alpha
Helix 121	121	I	146	161	Right-handed alpha
Helix 122	122	I	169	173	Right-handed 310
Helix 123	123	I	174	181	Right-handed alpha
Helix 124	124	I	206	214	Right-handed alpha
Helix 125	125	I	221	226	Right-handed alpha
Helix 126	126	I	229	241	Right-handed alpha
Helix 127	127	J	25	36	Right-handed alpha
Helix 128	128	J	37	41	Right-handed 310
Helix 129	129	J	47	54	Right-handed alpha
Helix 130	130	J	53	64	Right-handed alpha
Helix 131	131	J	77	92	Right-handed alpha
Helix 132	132	J	103	115	Right-handed alpha
Helix 133	133	J	116	121	Right-handed 310
Helix 134	134	J	134	139	Right-handed alpha
Helix 135	135	J	146	161	Right-handed alpha
Helix 136	136	J	169	173	Right-handed 310
Helix 137	137	J	174	181	Right-handed alpha
Helix 138	138	J	206	214	Right-handed alpha
Helix 139	139	J	221	226	Right-handed alpha
Helix 140	140	J	229	241	Right-handed alpha
Helix 141	141	K	25	36	Right-handed alpha
Helix 142	142	K	37	41	Right-handed 310
Helix 143	143	K	47	54	Right-handed alpha
Helix 144	144	K	53	64	Right-handed alpha
Helix 145	145	K	77	92	Right-handed alpha
Helix 146	146	K	103	115	Right-handed alpha
Helix 147	147	K	116	121	Right-handed 310
Helix 148	148	K	134	139	Right-handed alpha
Helix 149	149	K	146	161	Right-handed alpha
Helix 150	150	K	169	173	Right-handed 310
Helix 151	151	K	174	181	Right-handed alpha
Helix 152	152	K	206	214	Right-handed alpha
Helix 153	153	K	221	226	Right-handed alpha
Helix 154	154	K	229	241	Right-handed alpha
Helix 155	155	L	25	36	Right-handed alpha
Helix 156	156	L	37	41	Right-handed 310
Helix 157	157	L	47	54	Right-handed alpha
Helix 158	158	L	53	64	Right-handed alpha
Helix 159	159	L	77	92	Right-handed alpha
Helix 160	160	L	103	115	Right-handed alpha
Helix 161	161	L	116	121	Right-handed 310
Helix 162	162	L	134	139	Right-handed alpha
Helix 163	163	L	146	161	Right-handed alpha
Helix 164	164	L	169	173	Right-handed 310
Helix 165	165	L	174	181	Right-handed alpha
Helix 166	166	L	206	214	Right-handed alpha
Helix 167	167	L	221	226	Right-handed alpha
Helix 168	168	L	229	241	Right-handed alpha
Helix 169	169	M	25	36	Right-handed alpha
Helix 170	170	M	37	41	Right-handed 310
Helix 171	171	M	47	54	Right-handed alpha
Helix 172	172	M	53	64	Right-handed alpha
Helix 173	173	M	77	92	Right-handed alpha
Helix 174	174	M	103	115	Right-handed alpha
Helix 175	175	M	116	121	Right-handed 310
Helix 176	176	M	134	139	Right-handed alpha
Helix 177	177	M	146	161	Right-handed alpha
Helix 178	178	M	169	173	Right-handed 310
Helix 179	179	M	174	181	Right-handed alpha
Helix 180	180	M	206	214	Right-handed alpha
Helix 181	181	M	221	226	Right-handed alpha
Helix 182	182	M	229	241	Right-handed alpha
Helix 183	183	N	25	36	Right-handed alpha
Helix 184	184	N	37	41	Right-handed 310
Helix 185	185	N	47	54	Right-handed alpha
Helix 186	186	N	53	64	Right-handed alpha
Helix 187	187	N	77	92	Right-handed alpha
Helix 188	188	N	103	115	Right-handed alpha
Helix 189	189	N	116	121	Right-handed 310
Helix 190	190	N	134	139	Right-handed alpha
Helix 191	191	N	146	161	Right-handed alpha
Helix 192	192	N	169	173	Right-handed 310
Helix 193	193	N	174	181	Right-handed alpha
Helix 194	194	N	206	214	Right-handed alpha
Helix 195	195	N	221	226	Right-handed alpha
Helix 196	196	N	229	241	Right-handed alpha
Helix 197	197	O	25	36	Right-handed alpha
Helix 198	198	O	37	41	Right-handed 310
Helix 199	199	O	47	54	Right-handed alpha
Helix 200	200	O	53	64	Right-handed alpha
Helix 201	201	O	77	92	Right-handed alpha
Helix 202	202	O	103	115	Right-handed alpha
Helix 203	203	O	116	121	Right-handed 310
Helix 204	204	O	134	139	Right-handed alpha
Helix 205	205	O	146	161	Right-handed alpha
Helix 206	206	O	169	173	Right-handed 310
Helix 207	207	O	174	181	Right-handed alpha
Helix 208	208	O	206	214	Right-handed alpha
Helix 209	209	O	221	226	Right-handed alpha
Helix 210	210	O	229	241	Right-handed alpha
Helix 211	211	P	25	36	Right-handed alpha
Helix 212	212	P	37	41	Right-handed 310
Helix 213	213	P	47	54	Right-handed alpha
Helix 214	214	P	53	64	Right-handed alpha
Helix 215	215	P	77	92	Right-handed alpha
Helix 216	216	P	103	115	Right-handed alpha
Helix 217	217	P	116	121	Right-handed 310
Helix 218	218	P	134	139	Right-handed alpha
Helix 219	219	P	146	161	Right-handed alpha
Helix 220	220	P	169	173	Right-handed 310
Helix 221	221	P	174	181	Right-handed alpha
Helix 222	222	P	206	214	Right-handed alpha
Helix 223	223	P	221	226	Right-handed alpha
Helix 224	224	P	229	241	Right-handed alpha

There are 16 sheets in PDB entry 1JJK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	42	46	parallel
Strand 3	A	68	74	parallel
Strand 4	A	95	99	parallel
Strand 5	A	123	127	parallel
Strand 6	A	165	167	parallel
Strand 7	A	185	188	parallel
Strand 8	A	217	220	parallel
Strand 9	A	17	20	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	42	46	parallel
Strand 3	B	68	74	parallel
Strand 4	B	95	99	parallel
Strand 5	B	123	127	parallel
Strand 6	B	165	167	parallel
Strand 7	B	185	188	parallel
Strand 8	B	217	220	parallel
Strand 9	B	17	20	parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	42	46	parallel
Strand 3	C	68	74	parallel
Strand 4	C	95	99	parallel
Strand 5	C	123	127	parallel
Strand 6	C	165	167	parallel
Strand 7	C	185	188	parallel
Strand 8	C	217	220	parallel
Strand 9	C	17	20	parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	42	46	parallel
Strand 3	D	68	74	parallel
Strand 4	D	95	99	parallel
Strand 5	D	123	127	parallel
Strand 6	D	165	167	parallel
Strand 7	D	185	188	parallel
Strand 8	D	217	220	parallel
Strand 9	D	17	20	parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	20	first strand
Strand 2	E	42	46	parallel
Strand 3	E	68	74	parallel
Strand 4	E	95	99	parallel
Strand 5	E	123	127	parallel
Strand 6	E	165	167	parallel
Strand 7	E	185	188	parallel
Strand 8	E	217	220	parallel
Strand 9	E	17	20	parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	20	first strand
Strand 2	F	42	46	parallel
Strand 3	F	68	74	parallel
Strand 4	F	95	99	parallel
Strand 5	F	123	127	parallel
Strand 6	F	165	167	parallel
Strand 7	F	185	188	parallel
Strand 8	F	217	220	parallel
Strand 9	F	17	20	parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	20	first strand
Strand 2	G	42	46	parallel
Strand 3	G	68	74	parallel
Strand 4	G	95	99	parallel
Strand 5	G	123	127	parallel
Strand 6	G	165	167	parallel
Strand 7	G	185	188	parallel
Strand 8	G	217	220	parallel
Strand 9	G	17	20	parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	20	first strand
Strand 2	H	42	46	parallel
Strand 3	H	68	74	parallel
Strand 4	H	95	99	parallel
Strand 5	H	123	127	parallel
Strand 6	H	165	167	parallel
Strand 7	H	185	188	parallel
Strand 8	H	217	220	parallel
Strand 9	H	17	20	parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	20	first strand
Strand 2	I	42	46	parallel
Strand 3	I	68	74	parallel
Strand 4	I	95	99	parallel
Strand 5	I	123	127	parallel
Strand 6	I	165	167	parallel
Strand 7	I	185	188	parallel
Strand 8	I	217	220	parallel
Strand 9	I	17	20	parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	20	first strand
Strand 2	J	42	46	parallel
Strand 3	J	68	74	parallel
Strand 4	J	95	99	parallel
Strand 5	J	123	127	parallel
Strand 6	J	165	167	parallel
Strand 7	J	185	188	parallel
Strand 8	J	217	220	parallel
Strand 9	J	17	20	parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	20	first strand
Strand 2	K	42	46	parallel
Strand 3	K	68	74	parallel
Strand 4	K	95	99	parallel
Strand 5	K	123	127	parallel
Strand 6	K	165	167	parallel
Strand 7	K	185	188	parallel
Strand 8	K	217	220	parallel
Strand 9	K	17	20	parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	20	first strand
Strand 2	L	42	46	parallel
Strand 3	L	68	74	parallel
Strand 4	L	95	99	parallel
Strand 5	L	123	127	parallel
Strand 6	L	165	167	parallel
Strand 7	L	185	188	parallel
Strand 8	L	217	220	parallel
Strand 9	L	17	20	parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	17	20	first strand
Strand 2	M	42	46	parallel
Strand 3	M	68	74	parallel
Strand 4	M	95	99	parallel
Strand 5	M	123	127	parallel
Strand 6	M	165	167	parallel
Strand 7	M	185	188	parallel
Strand 8	M	217	220	parallel
Strand 9	M	17	20	parallel

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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	17	20	first strand
Strand 2	N	42	46	parallel
Strand 3	N	68	74	parallel
Strand 4	N	95	99	parallel
Strand 5	N	123	127	parallel
Strand 6	N	165	167	parallel
Strand 7	N	185	188	parallel
Strand 8	N	217	220	parallel
Strand 9	N	17	20	parallel

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There are 9 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	17	20	first strand
Strand 2	O	42	46	parallel
Strand 3	O	68	74	parallel
Strand 4	O	95	99	parallel
Strand 5	O	123	127	parallel
Strand 6	O	165	167	parallel
Strand 7	O	185	188	parallel
Strand 8	O	217	220	parallel
Strand 9	O	17	20	parallel

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There are 9 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	17	20	first strand
Strand 2	P	42	46	parallel
Strand 3	P	68	74	parallel
Strand 4	P	95	99	parallel
Strand 5	P	123	127	parallel
Strand 6	P	165	167	parallel
Strand 7	P	185	188	parallel
Strand 8	P	217	220	parallel
Strand 9	P	17	20	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1JJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJK