Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JJO entry

There are 6 chains in PDB entry 1JJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 29ALA 68
C
 GLU 107SER 357
E
 TYR 361HIS 393
B
 THR 29ALA 68
D
 GLU 107SER 357
F
 TYR 361HIS 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1JJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 38Right-handed alpha
Helix 2
2
A
53 65Right-handed alpha
Helix 3
3
C
127 138Right-handed alpha
Helix 4
4
C
149 165Right-handed alpha
Helix 5
5
C
259 263Right-handed 310
Helix 6
6
C
268 274Right-handed alpha
Helix 7
7
C
275 278Right-handed 310
Helix 8
8
C
298 305Right-handed alpha
Helix 9
9
B
29 38Right-handed alpha
Helix 10
10
B
53 65Right-handed alpha
Helix 11
11
D
127 138Right-handed alpha
Helix 12
12
D
149 165Right-handed alpha
Helix 13
13
D
259 263Right-handed 310
Helix 14
14
D
268 274Right-handed alpha
Helix 15
15
D
275 278Right-handed 310
Helix 16
16
D
298 305Right-handed alpha
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There are 6 sheets in PDB entry 1JJO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
E
382 388anti-parallel
Strand 3
E
370 376anti-parallel
Strand 4
C
248 254anti-parallel
Strand 5
C
236 243anti-parallel
Strand 6
C
228 233anti-parallel
Strand 7
C
280 281anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 145first strand
Strand 2
C
114 121parallel
Strand 3
C
182 193anti-parallel
Strand 4
C
344 354anti-parallel
Strand 5
C
331 339anti-parallel
Strand 6
C
292 295anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 208first strand
Strand 2
C
216 224anti-parallel
Strand 3
C
285 289anti-parallel
Strand 4
E
363 365parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
F
382 388anti-parallel
Strand 3
F
370 376anti-parallel
Strand 4
D
248 254anti-parallel
Strand 5
D
236 243anti-parallel
Strand 6
D
228 233anti-parallel
Strand 7
D
280 281anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
142 145first strand
Strand 2
D
114 121parallel
Strand 3
D
182 193anti-parallel
Strand 4
D
344 354anti-parallel
Strand 5
D
331 339anti-parallel
Strand 6
D
292 295anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
204 208first strand
Strand 2
D
216 224anti-parallel
Strand 3
D
285 289anti-parallel
Strand 4
F
363 365parallel
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