Analysis of interatomic Contacts of Structural Units in PDB entry:
1JJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JJU entry

There are 4 chains in PDB entry 1JJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ARG 489
B
 ARG 1GLU 337
C
 MET 1TRP 42
C
 PRO 44LYS 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1JJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 10Right-handed alpha
Helix 2
2
A
11 13Right-handed 310
Helix 3
3
A
33 47Right-handed alpha
Helix 4
4
A
53 67Right-handed alpha
Helix 5
5
A
71 74Right-handed 310
Helix 6
6
A
78 80Right-handed 310
Helix 7
7
A
94 101Right-handed alpha
Helix 8
8
A
106 111Right-handed alpha
Helix 9
9
A
116 129Right-handed alpha
Helix 10
10
A
133 135Right-handed 310
Helix 11
11
A
144 159Right-handed alpha
Helix 12
12
A
416 421Right-handed alpha
Helix 13
13
A
423 425Right-handed 310
Helix 14
14
A
448 450Right-handed 310
Helix 15
15
B
18 20Right-handed 310
Helix 16
16
B
320 322Right-handed 310
Helix 17
17
C
30 32Right-handed 310
Helix 18
18
C
33 39Right-handed alpha
Helix 19
19
C
68 70Right-handed 310
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There are 14 sheets in PDB entry 1JJU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
112 114anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 183first strand
Strand 2
A
187 198anti-parallel
Strand 3
A
201 210anti-parallel
Strand 4
A
213 224anti-parallel
Strand 5
A
228 235anti-parallel
Strand 6
A
238 247anti-parallel
Strand 7
A
250 257anti-parallel
Strand 8
A
264 271anti-parallel
Strand 9
A
175 183anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 287first strand
Strand 2
A
292 299anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
311 317anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
343 350parallel
Strand 3
A
334 340anti-parallel
Strand 4
A
305 306anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
A
382 387anti-parallel
Strand 3
A
400 405anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 366first strand
Strand 2
A
471 479parallel
Strand 3
A
455 463anti-parallel
Strand 4
A
407 413anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
435 438anti-parallel
Strand 3
A
428 431anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 28first strand
Strand 2
B
12 17anti-parallel
Strand 3
B
2 8anti-parallel
Strand 4
B
331 334anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
57 62anti-parallel
Strand 4
B
68 73anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
95 106anti-parallel
Strand 3
B
109 112anti-parallel
Strand 4
B
95 106anti-parallel
Strand 5
B
87 89anti-parallel
Strand 6
B
95 106anti-parallel
Strand 7
B
116 121anti-parallel
Strand 8
B
126 132anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 142first strand
Strand 2
B
149 152anti-parallel
Strand 3
B
156 160anti-parallel
Strand 4
B
165 170anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 206first strand
Strand 2
B
217 225anti-parallel
Strand 3
B
230 238anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 248first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
261 266anti-parallel
Strand 4
B
271 277anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
293 297anti-parallel
Strand 3
B
302 307anti-parallel
Strand 4
B
313 318anti-parallel
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