Analysis of interatomic Contacts of Structural Units in PDB entry:
1JK7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JK7 entry

There is 1 chain in PDB entry 1JK7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6ALA 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1JK7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
31 49Right-handed alpha
Helix 3
3
A
68 80Right-handed alpha
Helix 4
4
A
99 114Right-handed alpha
Helix 5
5
A
127 132Right-handed alpha
Helix 6
6
A
135 144Right-handed alpha
Helix 7
7
A
145 157Right-handed alpha
Helix 8
8
A
182 188Right-handed alpha
Helix 9
9
A
199 207Right-handed alpha
Helix 10
10
A
228 239Right-handed alpha
Helix 11
11
A
271 275Right-handed 310
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There are 3 sheets in PDB entry 1JK7. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
162 165parallel
Strand 3
A
169 172anti-parallel
Strand 4
A
243 246parallel
Strand 5
A
263 266parallel
Strand 6
A
255 258anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
87 89parallel
Strand 3
A
59 62parallel
Strand 4
A
280 285anti-parallel
Strand 5
A
291 296anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
225 227parallel
Strand 3
A
216 218anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il