Analysis of interatomic Contacts of Structural Units in PDB entry:
1JKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JKF entry

There are 2 chains in PDB entry 1JKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11LEU 533
B
 THR 10LEU 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1JKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 90Right-handed alpha
Helix 2
2
A
108 113Right-handed alpha
Helix 3
3
A
138 140Right-handed 310
Helix 4
4
A
153 162Right-handed alpha
Helix 5
5
A
165 172Right-handed alpha
Helix 6
6
A
172 177Right-handed alpha
Helix 7
7
A
187 189Right-handed 310
Helix 8
8
A
215 234Right-handed alpha
Helix 9
9
A
260 271Right-handed alpha
Helix 10
10
A
276 288Right-handed alpha
Helix 11
11
A
302 313Right-handed alpha
Helix 12
12
A
323 339Right-handed alpha
Helix 13
13
A
438 457Right-handed alpha
Helix 14
14
A
481 487Right-handed 310
Helix 15
15
A
502 518Right-handed alpha
Helix 16
16
A
527 532Right-handed alpha
Helix 17
17
B
75 90Right-handed alpha
Helix 18
18
B
108 113Right-handed alpha
Helix 19
19
B
138 140Right-handed 310
Helix 20
20
B
153 161Right-handed alpha
Helix 21
21
B
165 172Right-handed alpha
Helix 22
22
B
172 178Right-handed alpha
Helix 23
23
B
187 191Right-handed 310
Helix 24
24
B
215 235Right-handed alpha
Helix 25
25
B
262 270Right-handed alpha
Helix 26
26
B
276 287Right-handed alpha
Helix 27
27
B
302 311Right-handed alpha
Helix 28
28
B
312 314Right-handed 310
Helix 29
29
B
325 338Right-handed alpha
Helix 30
30
B
423 425Right-handed 310
Helix 31
31
B
438 456Right-handed alpha
Helix 32
32
B
483 487Right-handed 310
Helix 33
33
B
502 517Right-handed alpha
Helix 34
34
B
527 532Right-handed alpha
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There are 12 sheets in PDB entry 1JKF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
B
45 50parallel
Strand 3
B
34 37anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
53 59anti-parallel
Strand 4
A
459 464anti-parallel
Strand 5
A
475 476anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
45 50anti-parallel
Strand 3
B
12 14parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
66 71parallel
Strand 3
A
239 243parallel
Strand 4
A
292 294parallel
Strand 5
A
316 318parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
99 101anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
126 129anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
247 248anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 347first strand
Strand 2
A
412 421anti-parallel
Strand 3
A
427 436anti-parallel
Strand 4
B
427 436anti-parallel
Strand 5
B
412 421anti-parallel
Strand 6
B
342 348anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
459 464anti-parallel
Strand 5
B
475 476anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 147first strand
Strand 2
B
66 71parallel
Strand 3
B
239 243parallel
Strand 4
B
292 294parallel
Strand 5
B
316 317parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
99 101anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
126 129anti-parallel
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