Analysis of interatomic Contacts of Structural Units in PDB entry:
1JKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JKJ entry

There are 4 chains in PDB entry 1JKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 287
B
 MET 1LYS 388
D
 SER 1LEU 287
E
 MET 1VAL 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 1JKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 31Right-handed alpha
Helix 2
2
A
55 64Right-handed alpha
Helix 3
3
A
73 75Right-handed 310
Helix 4
4
A
76 87Right-handed alpha
Helix 5
5
A
100 115Right-handed alpha
Helix 6
6
A
153 167Right-handed alpha
Helix 7
7
A
186 196Right-handed alpha
Helix 8
8
A
212 225Right-handed alpha
Helix 9
9
A
257 268Right-handed alpha
Helix 10
10
A
275 277Right-handed 310
Helix 11
11
A
278 287Right-handed alpha
Helix 12
12
B
4 15Right-handed alpha
Helix 13
13
B
27 39Right-handed alpha
Helix 14
14
B
65 77Right-handed alpha
Helix 15
15
B
132 140Right-handed alpha
Helix 16
16
B
156 167Right-handed alpha
Helix 17
17
B
171 191Right-handed alpha
Helix 18
18
B
220 225Right-handed 310
Helix 19
19
B
226 232Right-handed alpha
Helix 20
20
B
233 233Right-handed 310
Helix 21
21
B
234 238Right-handed 310
Helix 22
22
B
239 248Right-handed alpha
Helix 23
23
B
265 279Right-handed alpha
Helix 24
24
B
294 307Right-handed alpha
Helix 25
25
B
324 339Right-handed alpha
Helix 26
26
B
353 363Right-handed alpha
Helix 27
27
B
373 384Right-handed alpha
Helix 28
28
D
17 31Right-handed alpha
Helix 29
29
D
55 64Right-handed alpha
Helix 30
30
D
73 75Right-handed 310
Helix 31
31
D
76 87Right-handed alpha
Helix 32
32
D
100 115Right-handed alpha
Helix 33
33
D
153 167Right-handed alpha
Helix 34
34
D
186 196Right-handed alpha
Helix 35
35
D
212 225Right-handed alpha
Helix 36
36
D
257 268Right-handed alpha
Helix 37
37
D
275 277Right-handed 310
Helix 38
38
D
278 287Right-handed alpha
Helix 39
39
E
4 15Right-handed alpha
Helix 40
40
E
27 39Right-handed alpha
Helix 41
41
E
65 77Right-handed alpha
Helix 42
42
E
132 140Right-handed alpha
Helix 43
43
E
141 144Right-handed 310
Helix 44
44
E
156 167Right-handed alpha
Helix 45
45
E
171 191Right-handed alpha
Helix 46
46
E
220 225Right-handed 310
Helix 47
47
E
226 233Right-handed alpha
Helix 48
48
E
234 238Right-handed 310
Helix 49
49
E
239 248Right-handed alpha
Helix 50
50
E
265 279Right-handed alpha
Helix 51
51
E
294 307Right-handed alpha
Helix 52
52
E
324 339Right-handed alpha
Helix 53
53
E
353 363Right-handed alpha
Helix 54
54
E
373 384Right-handed alpha
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There are 16 sheets in PDB entry 1JKJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
33 38parallel
Strand 4
A
9 13parallel
Strand 5
A
67 70parallel
Strand 6
A
91 94parallel
Strand 7
A
117 119parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
171 176anti-parallel
Strand 4
A
147 151parallel
Strand 5
A
202 208parallel
Strand 6
A
229 234parallel
Strand 7
A
271 272parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
43 47anti-parallel
Strand 4
B
60 63anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
91 92anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
120 126anti-parallel
Strand 3
B
104 115anti-parallel
Strand 4
B
193 204anti-parallel
Strand 5
B
209 211anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
120 126anti-parallel
Strand 3
B
104 115anti-parallel
Strand 4
B
193 204anti-parallel
Strand 5
B
215 218anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 254first strand
Strand 2
B
285 288anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 263first strand
Strand 2
B
313 319parallel
Strand 3
B
345 350parallel
Strand 4
B
368 370parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 47first strand
Strand 2
D
50 53anti-parallel
Strand 3
D
33 38parallel
Strand 4
D
9 13parallel
Strand 5
D
67 70parallel
Strand 6
D
91 94parallel
Strand 7
D
117 119parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 135first strand
Strand 2
D
125 128anti-parallel
Strand 3
D
171 176anti-parallel
Strand 4
D
147 151parallel
Strand 5
D
202 208parallel
Strand 6
D
229 234parallel
Strand 7
D
271 272parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 25first strand
Strand 2
E
96 100anti-parallel
Strand 3
E
43 47anti-parallel
Strand 4
E
60 63anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
80 81first strand
Strand 2
E
91 92anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
145 148first strand
Strand 2
E
120 126anti-parallel
Strand 3
E
104 115anti-parallel
Strand 4
E
193 204anti-parallel
Strand 5
E
209 211anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
145 148first strand
Strand 2
E
120 126anti-parallel
Strand 3
E
104 115anti-parallel
Strand 4
E
193 204anti-parallel
Strand 5
E
215 218anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
251 254first strand
Strand 2
E
285 288anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
259 263first strand
Strand 2
E
313 319parallel
Strand 3
E
345 350parallel
Strand 4
E
368 370parallel
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