Analysis of interatomic Contacts of Structural Units in PDB entry:
1JKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JKM entry

There are 2 chains in PDB entry 1JKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13ARG 370
B
 TYR 10ARG 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 1JKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 17Right-handed alpha
Helix 2
2
A
31 40Right-handed alpha
Helix 3
3
A
57 77Right-handed alpha
Helix 4
4
A
137 148Right-handed alpha
Helix 5
5
A
172 191Right-handed alpha
Helix 6
6
A
202 217Right-handed 310
Helix 7
7
A
221 223Right-handed 310
Helix 8
8
A
242 248Right-handed alpha
Helix 9
9
A
250 254Right-handed 310
Helix 10
10
A
262 272Right-handed alpha
Helix 11
11
A
286 288Right-handed 310
Helix 12
12
A
291 294Right-handed alpha
Helix 13
13
A
309 323Right-handed 310
Helix 14
14
A
340 343Right-handed alpha
Helix 15
15
A
345 347Right-handed 310
Helix 16
16
A
349 368Right-handed alpha
Helix 17
17
B
14 17Right-handed alpha
Helix 18
18
B
31 40Right-handed alpha
Helix 19
19
B
57 77Right-handed alpha
Helix 20
20
B
137 148Right-handed alpha
Helix 21
21
B
172 186Right-handed alpha
Helix 22
22
B
188 191Right-handed alpha
Helix 23
23
B
202 217Right-handed 310
Helix 24
24
B
221 223Right-handed 310
Helix 25
25
B
242 248Right-handed alpha
Helix 26
26
B
250 254Right-handed 310
Helix 27
27
B
262 272Right-handed alpha
Helix 28
28
B
286 288Right-handed 310
Helix 29
29
B
291 294Right-handed alpha
Helix 30
30
B
309 323Right-handed 310
Helix 31
31
B
340 343Right-handed alpha
Helix 32
32
B
345 347Right-handed 310
Helix 33
33
B
349 368Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1JKM. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 97first strand
Strand 2
A
103 111anti-parallel
Strand 3
A
152 157anti-parallel
Strand 4
A
118 124parallel
Strand 5
A
193 201parallel
Strand 6
A
226 230parallel
Strand 7
A
299 305parallel
Strand 8
A
328 333parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 97first strand
Strand 2
B
103 111anti-parallel
Strand 3
B
151 156anti-parallel
Strand 4
B
118 124parallel
Strand 5
B
193 201parallel
Strand 6
B
226 230parallel
Strand 7
B
299 305parallel
Strand 8
B
328 333parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il