Analysis of interatomic Contacts of Structural Units in PDB entry:
1JKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JKT entry

There are 2 chains in PDB entry 1JKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PRO 277
B
 THR 2PRO 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1JKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
57 69Right-handed alpha
Helix 3
3
A
100 105Right-handed alpha
Helix 4
4
A
106 109Right-handed 310
Helix 5
5
A
112 132Right-handed alpha
Helix 6
6
A
141 145Right-handed 310
Helix 7
7
A
185 190Right-handed alpha
Helix 8
8
A
195 210Right-handed alpha
Helix 9
9
A
221 227Right-handed alpha
Helix 10
10
A
237 242Right-handed alpha
Helix 11
11
A
245 254Right-handed alpha
Helix 12
12
A
265 270Right-handed alpha
Helix 13
13
A
271 276Right-handed 310
Helix 14
14
B
8 12Right-handed 310
Helix 15
15
B
57 70Right-handed alpha
Helix 16
16
B
102 104Right-handed 310
Helix 17
17
B
112 132Right-handed alpha
Helix 18
18
B
141 143Right-handed 310
Helix 19
19
B
198 213Right-handed alpha
Helix 20
20
B
221 231Right-handed alpha
Helix 21
21
B
247 254Right-handed alpha
Helix 22
22
B
265 271Right-handed alpha
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There are 7 sheets in PDB entry 1JKT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
25 30anti-parallel
Strand 3
A
39 45anti-parallel
Strand 4
A
88 93anti-parallel
Strand 5
A
79 84anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
166 167anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
157 158anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
39 41anti-parallel
Strand 3
B
93 94anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
88 90anti-parallel
Strand 3
B
83 84anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
145 147anti-parallel
Strand 3
B
158 159anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
166 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il