Analysis of interatomic Contacts of Structural Units in PDB entry:
1JKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JKY entry

There are 2 chains in PDB entry 1JKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29SER 776
B
 MET 1PRO 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1JKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 42Right-handed 310
Helix 2
2
A
54 65Right-handed alpha
Helix 3
3
A
68 76Right-handed alpha
Helix 4
4
A
145 157Right-handed alpha
Helix 5
5
A
168 177Right-handed alpha
Helix 6
6
A
184 189Right-handed alpha
Helix 7
7
A
191 197Right-handed alpha
Helix 8
8
A
202 207Right-handed 310
Helix 9
9
A
209 226Right-handed alpha
Helix 10
10
A
226 237Right-handed alpha
Helix 11
11
A
237 247Right-handed alpha
Helix 12
12
A
251 258Right-handed alpha
Helix 13
13
A
266 284Right-handed alpha
Helix 14
14
A
286 298Right-handed alpha
Helix 15
15
A
304 309Right-handed alpha
Helix 16
16
A
312 322Right-handed alpha
Helix 17
17
A
331 347Right-handed alpha
Helix 18
18
A
351 360Right-handed alpha
Helix 19
19
A
369 383Right-handed alpha
Helix 20
20
A
406 423Right-handed alpha
Helix 21
21
A
442 452Right-handed alpha
Helix 22
22
A
464 473Right-handed alpha
Helix 23
23
A
551 575Right-handed alpha
Helix 24
24
A
594 599Right-handed alpha
Helix 25
25
A
599 610Right-handed alpha
Helix 26
26
A
611 624Right-handed alpha
Helix 27
27
A
639 644Right-handed alpha
Helix 28
28
A
661 664Right-handed 310
Helix 29
29
A
680 696Right-handed alpha
Helix 30
30
A
711 722Right-handed alpha
Helix 31
31
A
732 744Right-handed alpha
Helix 32
32
A
748 759Right-handed alpha
Helix 33
33
A
759 764Right-handed alpha
Helix 34
34
A
764 771Right-handed alpha
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There are 6 sheets in PDB entry 1JKY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
81 82parallel
Strand 3
A
128 131parallel
Strand 4
A
119 122anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
499 501anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 480first strand
Strand 2
A
525 528anti-parallel
Strand 3
A
549 550anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 487first strand
Strand 2
A
518 521anti-parallel
Strand 3
A
511 514anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 537first strand
Strand 2
A
540 543anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 586first strand
Strand 2
A
629 632parallel
Strand 3
A
665 669parallel
Strand 4
A
659 660anti-parallel
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