Analysis of interatomic Contacts of Structural Units in PDB entry:
1JL0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JL0 entry

There are 2 chains in PDB entry 1JL0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 5GLN 329
B
 HIS 5GLN 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1JL0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
36 46Right-handed alpha
Helix 3
3
A
86 89Right-handed 310
Helix 4
4
A
90 103Right-handed alpha
Helix 5
5
A
119 123Right-handed 310
Helix 6
6
A
129 139Right-handed alpha
Helix 7
7
A
185 190Right-handed alpha
Helix 8
8
A
199 207Right-handed alpha
Helix 9
9
A
264 276Right-handed alpha
Helix 10
10
B
31 35Right-handed 310
Helix 11
11
B
36 46Right-handed alpha
Helix 12
12
B
86 89Right-handed 310
Helix 13
13
B
90 103Right-handed alpha
Helix 14
14
B
119 123Right-handed 310
Helix 15
15
B
129 139Right-handed alpha
Helix 16
16
B
185 190Right-handed alpha
Helix 17
17
B
199 207Right-handed alpha
Helix 18
18
B
209 213Right-handed 310
Helix 19
19
B
247 250Right-handed 310
Helix 20
20
B
264 276Right-handed alpha
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There are 3 sheets in PDB entry 1JL0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
70 73anti-parallel
Strand 4
A
76 81anti-parallel
Strand 5
A
12 19anti-parallel
Strand 6
A
106 115anti-parallel
Strand 7
A
157 162anti-parallel
Strand 8
A
144 149anti-parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 222first strand
Strand 2
A
228 233anti-parallel
Strand 3
A
239 245anti-parallel
Strand 4
A
252 257anti-parallel
Strand 5
A
175 182anti-parallel
Strand 6
A
279 287anti-parallel
Strand 7
A
318 327anti-parallel
Strand 8
A
305 314anti-parallel
Strand 9
B
305 315anti-parallel
Strand 10
B
318 327anti-parallel
Strand 11
B
279 287anti-parallel
Strand 12
B
175 182anti-parallel
Strand 13
B
252 257anti-parallel
Strand 14
B
239 245anti-parallel
Strand 15
B
228 233anti-parallel
Strand 16
B
217 222anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 56first strand
Strand 2
B
60 65anti-parallel
Strand 3
B
70 73anti-parallel
Strand 4
B
76 81anti-parallel
Strand 5
B
12 19anti-parallel
Strand 6
B
106 115anti-parallel
Strand 7
B
156 162anti-parallel
Strand 8
B
144 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il