Analysis of interatomic Contacts of Structural Units in PDB entry:
1JLN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JLN entry

There is 1 chain in PDB entry 1JLN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 252VAL 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1JLN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
255 266Right-handed alpha
Helix 2
2
A
272 281Right-handed alpha
Helix 3
3
A
283 292Right-handed alpha
Helix 4
4
A
306 311Right-handed 310
Helix 5
5
A
319 322Right-handed 310
Helix 6
6
A
334 338Right-handed 310
Helix 7
7
A
346 350Right-handed 310
Helix 8
8
A
361 363Right-handed 310
Helix 9
9
A
364 375Right-handed alpha
Helix 10
10
A
453 469Right-handed alpha
Helix 11
11
A
484 504Right-handed alpha
Helix 12
12
A
507 519Right-handed alpha
Helix 13
13
A
525 542Right-handed alpha
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There are 2 sheets in PDB entry 1JLN. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
505 506anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
354 357anti-parallel
Strand 3
A
476 479parallel
Strand 4
A
379 382parallel
Strand 5
A
432 441parallel
Strand 6
A
420 429anti-parallel
Strand 7
A
407 416anti-parallel
Strand 8
A
401 404anti-parallel
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