Analysis of interatomic Contacts of Structural Units in PDB entry:
1JLS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JLS entry

There are 4 chains in PDB entry 1JLS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 21MET 244
A
 GLN 21THR 243
D
 GLN 21THR 243
C
 GLN 21THR 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1JLS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
21 32Right-handed alpha
Helix 2
2
B
42 54Right-handed alpha
Helix 3
3
B
58 78Right-handed alpha
Helix 4
4
B
79 81Right-handed 310
Helix 5
5
B
112 116Right-handed 310
Helix 6
6
B
117 125Right-handed alpha
Helix 7
7
B
154 158Right-handed 310
Helix 8
8
B
170 182Right-handed alpha
Helix 9
9
B
198 209Right-handed alpha
Helix 10
10
B
235 242Right-handed alpha
Helix 11
11
A
21 33Right-handed alpha
Helix 12
12
A
42 54Right-handed alpha
Helix 13
13
A
58 76Right-handed alpha
Helix 14
14
A
113 116Right-handed 310
Helix 15
15
A
117 125Right-handed alpha
Helix 16
16
A
154 158Right-handed 310
Helix 17
17
A
172 183Right-handed alpha
Helix 18
18
A
186 188Right-handed 310
Helix 19
19
A
198 209Right-handed alpha
Helix 20
20
A
235 242Right-handed alpha
Helix 21
21
D
21 33Right-handed alpha
Helix 22
22
D
42 54Right-handed alpha
Helix 23
23
D
58 78Right-handed alpha
Helix 24
24
D
79 81Right-handed 310
Helix 25
25
D
114 122Right-handed alpha
Helix 26
26
D
154 158Right-handed 310
Helix 27
27
D
170 181Right-handed alpha
Helix 28
28
D
182 184Right-handed 310
Helix 29
29
D
186 188Right-handed 310
Helix 30
30
D
198 209Right-handed alpha
Helix 31
31
D
235 241Right-handed alpha
Helix 32
32
C
21 33Right-handed alpha
Helix 33
33
C
42 54Right-handed alpha
Helix 34
34
C
58 78Right-handed alpha
Helix 35
35
C
79 81Right-handed 310
Helix 36
36
C
114 125Right-handed alpha
Helix 37
37
C
170 182Right-handed alpha
Helix 38
38
C
186 188Right-handed 310
Helix 39
39
C
198 209Right-handed alpha
Helix 40
40
C
235 242Right-handed alpha
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There are 13 sheets in PDB entry 1JLS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
213 219parallel
Strand 3
B
190 197parallel
Strand 4
B
159 163parallel
Strand 5
B
105 110parallel
Strand 6
B
129 135parallel
Strand 7
B
146 150anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
213 219parallel
Strand 3
B
190 197parallel
Strand 4
B
166 167parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 90first strand
Strand 2
B
94 101anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
213 216parallel
Strand 3
A
190 193parallel
Strand 4
A
159 163parallel
Strand 5
A
105 110parallel
Strand 6
A
130 136parallel
Strand 7
A
145 150anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
95 101anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
196 197parallel
Strand 3
A
218 219parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
229 230anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 38first strand
Strand 2
D
213 216parallel
Strand 3
D
190 193parallel
Strand 4
D
160 163parallel
Strand 5
D
107 110parallel
Strand 6
D
130 136parallel
Strand 7
D
145 150anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
83 89first strand
Strand 2
D
95 101anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
166 167first strand
Strand 2
D
196 197parallel
Strand 3
D
218 219parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
222 223first strand
Strand 2
D
229 230anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 38first strand
Strand 2
C
213 219parallel
Strand 3
C
190 197parallel
Strand 4
C
159 163parallel
Strand 5
C
105 110parallel
Strand 6
C
130 136parallel
Strand 7
C
145 150anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 90first strand
Strand 2
C
94 101anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il