Analysis of interatomic Contacts of Structural Units in PDB entry:
1JLV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JLV entry

There are 6 chains in PDB entry 1JLV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 207
B
 MET 1PHE 207
C
 MET 1PHE 207
D
 MET 1PHE 207
E
 MET 1PHE 207
F
 MET 1PHE 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 1JLV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
32 36Right-handed 310
Helix 3
3
A
36 39Right-handed 310
Helix 4
4
A
40 47Right-handed alpha
Helix 5
5
A
64 77Right-handed alpha
Helix 6
6
A
79 83Right-handed 310
Helix 7
7
A
86 103Right-handed alpha
Helix 8
8
A
103 117Right-handed alpha
Helix 9
9
A
123 141Right-handed alpha
Helix 10
10
A
153 169Right-handed alpha
Helix 11
11
A
172 175Right-handed 310
Helix 12
12
A
176 190Right-handed alpha
Helix 13
13
A
192 205Right-handed alpha
Helix 14
14
B
9 22Right-handed alpha
Helix 15
15
B
32 36Right-handed 310
Helix 16
16
B
36 39Right-handed 310
Helix 17
17
B
40 47Right-handed alpha
Helix 18
18
B
64 77Right-handed alpha
Helix 19
19
B
79 83Right-handed 310
Helix 20
20
B
86 103Right-handed alpha
Helix 21
21
B
103 118Right-handed alpha
Helix 22
22
B
123 141Right-handed alpha
Helix 23
23
B
153 169Right-handed alpha
Helix 24
24
B
172 175Right-handed 310
Helix 25
25
B
176 187Right-handed alpha
Helix 26
26
B
192 204Right-handed alpha
Helix 27
27
B
205 207Right-handed 310
Helix 28
28
C
9 23Right-handed alpha
Helix 29
29
C
32 36Right-handed 310
Helix 30
30
C
36 39Right-handed 310
Helix 31
31
C
40 47Right-handed alpha
Helix 32
32
C
64 77Right-handed alpha
Helix 33
33
C
79 83Right-handed 310
Helix 34
34
C
86 103Right-handed alpha
Helix 35
35
C
103 118Right-handed alpha
Helix 36
36
C
123 142Right-handed alpha
Helix 37
37
C
153 169Right-handed alpha
Helix 38
38
C
172 175Right-handed 310
Helix 39
39
C
176 190Right-handed alpha
Helix 40
40
C
192 205Right-handed alpha
Helix 41
41
D
9 23Right-handed alpha
Helix 42
42
D
32 36Right-handed 310
Helix 43
43
D
36 39Right-handed 310
Helix 44
44
D
40 47Right-handed alpha
Helix 45
45
D
64 77Right-handed alpha
Helix 46
46
D
79 83Right-handed 310
Helix 47
47
D
86 103Right-handed alpha
Helix 48
48
D
103 117Right-handed alpha
Helix 49
49
D
123 141Right-handed alpha
Helix 50
50
D
153 170Right-handed alpha
Helix 51
51
D
172 175Right-handed 310
Helix 52
52
D
176 190Right-handed alpha
Helix 53
53
D
192 205Right-handed alpha
Helix 54
54
E
9 23Right-handed alpha
Helix 55
55
E
36 39Right-handed 310
Helix 56
56
E
40 47Right-handed alpha
Helix 57
57
E
64 77Right-handed alpha
Helix 58
58
E
79 83Right-handed 310
Helix 59
59
E
86 103Right-handed alpha
Helix 60
60
E
103 117Right-handed alpha
Helix 61
61
E
123 141Right-handed alpha
Helix 62
62
E
153 170Right-handed alpha
Helix 63
63
E
172 175Right-handed 310
Helix 64
64
E
176 190Right-handed alpha
Helix 65
65
E
192 204Right-handed alpha
Helix 66
66
F
9 23Right-handed alpha
Helix 67
67
F
40 47Right-handed alpha
Helix 68
68
F
64 77Right-handed alpha
Helix 69
69
F
79 83Right-handed 310
Helix 70
70
F
86 103Right-handed alpha
Helix 71
71
F
103 117Right-handed alpha
Helix 72
72
F
123 141Right-handed alpha
Helix 73
73
F
153 170Right-handed alpha
Helix 74
74
F
172 175Right-handed 310
Helix 75
75
F
176 190Right-handed alpha
Helix 76
76
F
192 204Right-handed alpha
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There are 6 sheets in PDB entry 1JLV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
2 5parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
60 63anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
2 5parallel
Strand 3
B
54 57anti-parallel
Strand 4
B
60 63anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 30first strand
Strand 2
C
2 5parallel
Strand 3
C
54 57anti-parallel
Strand 4
C
60 63anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 30first strand
Strand 2
D
2 5parallel
Strand 3
D
54 57anti-parallel
Strand 4
D
60 63anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 30first strand
Strand 2
E
2 5parallel
Strand 3
E
54 57anti-parallel
Strand 4
E
60 63anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 30first strand
Strand 2
F
2 5parallel
Strand 3
F
54 57anti-parallel
Strand 4
F
60 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il