Analysis of interatomic Contacts of Structural Units in PDB entry:
1JM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JM6 entry

There are 2 chains in PDB entry 1JM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1003TYR 1366
B
 ASN 1002VAL 1365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1JM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1007 1016Right-handed alpha
Helix 2
2
A
1024 1030Right-handed alpha
Helix 3
3
A
1037 1061Right-handed alpha
Helix 4
4
A
1064 1069Right-handed alpha
Helix 5
5
A
1070 1089Right-handed alpha
Helix 6
6
A
1097 1115Right-handed alpha
Helix 7
7
A
1117 1128Right-handed alpha
Helix 8
8
A
1142 1169Right-handed alpha
Helix 9
9
A
1189 1209Right-handed alpha
Helix 10
10
A
1233 1256Right-handed alpha
Helix 11
11
A
1288 1292Right-handed 310
Helix 12
12
A
1293 1297Right-handed 310
Helix 13
13
A
1320 1332Right-handed alpha
Helix 14
14
B
1007 1016Right-handed alpha
Helix 15
15
B
1024 1030Right-handed alpha
Helix 16
16
B
1037 1061Right-handed alpha
Helix 17
17
B
1064 1069Right-handed alpha
Helix 18
18
B
1070 1089Right-handed alpha
Helix 19
19
B
1090 1093Right-handed 310
Helix 20
20
B
1097 1115Right-handed alpha
Helix 21
21
B
1117 1128Right-handed alpha
Helix 22
22
B
1142 1168Right-handed alpha
Helix 23
23
B
1189 1206Right-handed alpha
Helix 24
24
B
1233 1256Right-handed alpha
Helix 25
25
B
1288 1292Right-handed 310
Helix 26
26
B
1293 1297Right-handed 310
Helix 27
27
B
1320 1332Right-handed alpha
Helix 28
28
B
1355 1359Right-handed 310
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There are 4 sheets in PDB entry 1JM6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1184 1188first strand
Strand 2
A
1229 1232anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1214 1220first strand
Strand 2
A
1265 1271parallel
Strand 3
A
1275 1282anti-parallel
Strand 4
A
1345 1353anti-parallel
Strand 5
A
1335 1341anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1184 1188first strand
Strand 2
B
1229 1232anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1214 1220first strand
Strand 2
B
1265 1271parallel
Strand 3
B
1275 1282anti-parallel
Strand 4
B
1345 1353anti-parallel
Strand 5
B
1335 1341anti-parallel
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